BS27570.complete Sequence
1775 bp assembled on 2011-10-14
GenBank Submission: KX806352
> BS27570.complete
GAAGTTATCAGTCGACATGATTTGCCGTTTGTGCCTGAACAACGTTAACG
ATACAGATACGATTCGGATATTCGAGGACGTTGGCCTTTCCCTAAATGTG
GCCAATGTGCTGGCCAAATACTTTTGGTTTGAGCCAAAAAGCGATGATCC
CATTTCCACGGTGATCTGTTTGACCTGCTGGAACCAGGTGAACGATTTTC
ATCAATTCTATGTGGCCGTGGAGAGTGCACATCGTTTGCTCACCGAAAGG
TTCTCCCTGAAATCTGGCCAAGATCAGGGGAAAGTTGAGCACGGTGAGGA
CTCGGAGCAGCAGGAGGAGGAGCAGGATGAGGACCAGGAGCTGGGATTAC
CTGGAAGTGAGGGTGGTTCCTTTACCAACGAGCAGTTCCTCACCGAAGTT
ATTGCGCAGCAGGAGCAGCAAACGGATTCCAACCCACCAAAGGAGCAGTT
CATCAAAGAAGACAATGCTACTGTCAACGATCCAGAAACCTCAGCCACCT
TACCCACAGAGCAGCGTAGAGAAACTCGTTCGACCGCCAAAAGCAAAGCA
CATCATTCGTTGCCCCCTTCAACACCTCCTGAAAAATCGAATTCTGTGGC
GAACAAATCCAAAGCGAAACGAACCCCGTGCAAAGCAGAAGGAACTCCAC
AGAAAAGCAAACGCTATGCGGACTACAAGCAGTGCATGCTGGATATCGAT
GCCAAGATCTCTGCCCACATGCGACTCACCTGCGATGTTTGTCACGAGGG
GCAGGAGACCTTTCTTCTGCTCTGCAAGCACATGCTGCAGGAGCACCATC
GCAAGGGGTATGCTATTTGTTGCAATAAGAAGTTCTACAAGCGCTCCTTT
CTCACCGATCATATTGATCGACACGCCGATCCGGAGAAGTTTAAATGCAC
CCAGTGCGACAAACGATTTGCCGACAAACAGTGCCTGAGGAACCATGAGC
TGCTGAAGCACCATCCGGAGGAGGAGAAGACCTTTATGTGCGAACAGTGC
CCGAAAAGATACACCAAGCAGTATCTGTTGGATCAGCATCGCGTTATCCA
CAAGGAGCGCAATGTGGTGTGCGATCTATGTGAGAGGAGATTTCCCAACC
AATCCCTTCTTTGCACGCACGTCAAAATGGCGCATGGCAACTATGGTACC
ATGTGCGACATCTGCGCCCAGGTTATACGTGGACGAGCTGCCTTCCAGCG
ACATCAGCTGGAGCACGCTGGTGTCACGGAGCCCAAGGTTCAGTGCGACA
TCTGCGGATCCTGGCATAAGAACAAGCACAGTCTCAAGAAGCATGTGCGG
CGACATAATGGCACTGCTGCCACTTGCGATCTGTGTGGAAAGGTTTCGCC
CAATAGGAGTGCCATGCTGAGTCACCAGCGATATGTGCATCTCACGGATA
GGAAGCACGAATGTAGTGTGTGCAATAAAGCCTTCAAAAAGGCCATCACA
CTGAGGGAACACATGACCATGCATACGGGCGAGGTGCTTTACAAGTGTCC
TCACTGCCCGAAAACATTTAACTCCAATGCGAATCAGCACACGCATCGTA
GGAAGTGTCATCCCAAAGAGTTCGAGGAGGCAAGGAAGGCACGCACCGAG
AAACGAAAAGCCATCGAGGAGGAGACACCCAGCGTGTTGACCATCTCAAC
GGGCGAAGATGGGGAATCCCACAGCATTCTGCTGACAAATACCGAGGAGG
ATATTAAGGGAGATACCATCGAGTTCACTCTGTGTCTCAGTGCCGATACC
ACAGATTGAAAGCTTTCTAGACCAT
BS27570.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:36:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15073-RA | 1743 | CG15073-PA | 1..1743 | 17..1759 | 8715 | 100 | Plus |
| CG15073-RB | 1656 | CG15073-PB | 792..1656 | 895..1759 | 4325 | 100 | Plus |
| CG15073-RB | 1656 | CG15073-PB | 1..791 | 17..807 | 3955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:36:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15073-RA | 2054 | CG15073-RA | 107..1852 | 16..1761 | 8730 | 100 | Plus |
| CG15073-RB | 1967 | CG15073-RB | 899..1765 | 895..1761 | 4335 | 100 | Plus |
| CG15073-RB | 1967 | CG15073-RB | 107..898 | 16..807 | 3960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:36:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18706253..18707015 | 132..894 | 3815 | 100 | Plus |
| 2R | 25286936 | 2R | 18707351..18708024 | 1088..1761 | 3370 | 100 | Plus |
| 2R | 25286936 | 2R | 18707098..18707292 | 895..1089 | 975 | 100 | Plus |
| 2R | 25286936 | 2R | 18706083..18706200 | 16..133 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 21:36:07 has no hits.
BS27570.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:56:55 Download gff for
BS27570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15073-RA | 103..1844 | 17..1758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:31:16 Download gff for
BS27570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15073-RA | 108..1849 | 17..1758 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:35 Download gff for
BS27570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15073-RA | 108..1849 | 17..1758 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:35 Download gff for
BS27570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18706084..18706200 | 17..133 | 100 | -> | Plus |
| 2R | 18706255..18707015 | 134..894 | 100 | -> | Plus |
| 2R | 18707098..18707292 | 895..1089 | 100 | -> | Plus |
| 2R | 18707353..18708021 | 1090..1758 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:31:16 Download gff for
BS27570.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14593589..14593705 | 17..133 | 100 | -> | Plus |
| arm_2R | 14593760..14594520 | 134..894 | 100 | -> | Plus |
| arm_2R | 14594603..14594797 | 895..1089 | 100 | -> | Plus |
| arm_2R | 14594858..14595526 | 1090..1758 | 100 | | Plus |
BS27570.pep Sequence
Translation from 16 to 1758
> BS27570.pep
MICRLCLNNVNDTDTIRIFEDVGLSLNVANVLAKYFWFEPKSDDPISTVI
CLTCWNQVNDFHQFYVAVESAHRLLTERFSLKSGQDQGKVEHGEDSEQQE
EEQDEDQELGLPGSEGGSFTNEQFLTEVIAQQEQQTDSNPPKEQFIKEDN
ATVNDPETSATLPTEQRRETRSTAKSKAHHSLPPSTPPEKSNSVANKSKA
KRTPCKAEGTPQKSKRYADYKQCMLDIDAKISAHMRLTCDVCHEGQETFL
LLCKHMLQEHHRKGYAICCNKKFYKRSFLTDHIDRHADPEKFKCTQCDKR
FADKQCLRNHELLKHHPEEEKTFMCEQCPKRYTKQYLLDQHRVIHKERNV
VCDLCERRFPNQSLLCTHVKMAHGNYGTMCDICAQVIRGRAAFQRHQLEH
AGVTEPKVQCDICGSWHKNKHSLKKHVRRHNGTAATCDLCGKVSPNRSAM
LSHQRYVHLTDRKHECSVCNKAFKKAITLREHMTMHTGEVLYKCPHCPKT
FNSNANQHTHRRKCHPKEFEEARKARTEKRKAIEEETPSVLTISTGEDGE
SHSILLTNTEEDIKGDTIEFTLCLSADTTD*
BS27570.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:30:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15073-PA | 580 | CG15073-PA | 1..580 | 1..580 | 3162 | 100 | Plus |
| CG15073-PB | 551 | CG15073-PB | 1..551 | 1..580 | 2956 | 95 | Plus |
| CG8388-PA | 572 | CG8388-PA | 1..554 | 1..549 | 801 | 33.4 | Plus |
| grau-PA | 570 | CG33133-PA | 3..539 | 2..527 | 791 | 33.1 | Plus |
| CG2889-PB | 581 | CG2889-PB | 1..571 | 1..527 | 631 | 28 | Plus |
