Clone BS27571 Report

Search the DGRC for BS27571

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:71
Vector:pDNR-Dual
Associated Gene/TranscriptCG4404-RA
Protein status:BS27571.pep: full length peptide match
Sequenced Size:959

Clone Sequence Records

BS27571.complete Sequence

959 bp assembled on 2011-09-12

GenBank Submission: KX804844

> BS27571.complete
GAAGTTATCAGTCGACATGTGCTGGGTCGCAATGGCGCGCAAGGACGATC
CCGTTTTCAATGTGCGGTTCGTGCAGTTCGTGGAGAATCAGCCGTGCCTG
TGGAACTACACGCATCCGGGCTACAGCAAGAAGGAGGATGTGCAGAGGGC
GTGGCAGCAGGTTGCCAACGATATCAAGGACACGGTTCGCAACTGTCGCG
AGCGATGGCGCACCATAAGGAGCAGCTTCCTGCGATCCCTGAAGCTGGCA
CGCACACAAACGGGACGCGGCAAGCGCAAATACTACCTATCGAAGTATCT
TCAGTTTCTCGTTCCGTTCACCAAGTCGCGATCCTGCCACAAGCAGCTGC
CGGGCATGGTGCTCCGCAAACCCGGCCAAGCTGCCACTGCTCAGCAGGAA
GATGAGGTGGTGGCGGCGGAGGAGGAGGCCAAGGTGAGCGATGGTGAGAT
GCCGCTGGACGTTCAGGTGTCCGAGGAGGAGCATCGTCGTAATCAGGAAC
AGGATCGGGAGCAACCCACCGCCTGTTTGCCGCTCCGCCTGCATTCCATC
AAAGTGGAGCACGATTCGTCAAATGCGAACCAGCAGCTGGAGCGGATGGT
GAGCCAGCAGTCGCTGGTCTCGGTGCCCGCCGCCGCGCTGGGCAATCACC
TGGGCTGGTCGGATCTGACGCAGTGGTTCAAGGGACATGGCAGCGGTCAT
CACAAGTTAACCACAACAACAACAACACCAACATCACCACCACCGCCGCC
GCAGCCGGCTACGTCAGCTCTAAGTGTTTTCACTGGCGGACCAGGAGGAG
GTGGCTCACAACCGGATGCCGACTACTCCTTTCTGATCAGCCTGCATCCG
TACATCAAGGAGATGAACGGCAAGCAGAATCGAAAGTTTCGACAGAAGGT
CGTCGGACTCATCGACGATATTCTGGATAACAAGGATGTCTAAAAGCTTT
CTAGACCAT

BS27571.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:50:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG4404-RA 927 CG4404-PA 1..927 17..943 4635 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:50:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4404-RA 1696 CG4404-RA 237..1164 16..943 4640 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:50:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 12904277..12905035 943..185 3795 100 Minus
X 23542271 X 12905613..12905782 185..16 850 100 Minus
Blast to na_te.dros performed 2014-11-27 06:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\Het-A 6610 Dvir\Het-A HETAVIR 6610bp 3548..3624 663..738 131 67.1 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2369..2421 690..744 116 72.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1521..1575 714..768 112 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2367..2418 691..744 111 74.5 Plus

BS27571.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:19 Download gff for BS27571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 255..1179 17..941 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:17 Download gff for BS27571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 238..1162 17..941 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:55:58 Download gff for BS27571.complete
Subject Subject Range Query Range Percent Splice Strand
CG4404-RA 238..1162 17..941 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:55:58 Download gff for BS27571.complete
Subject Subject Range Query Range Percent Splice Strand
X 12905613..12905781 17..185 100   Minus
X 12904279..12905034 186..941 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:17 Download gff for BS27571.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 12798312..12799067 186..941 100 <- Minus
arm_X 12799646..12799814 17..185 100   Minus

BS27571.pep Sequence

Translation from 16 to 942

> BS27571.pep
MCWVAMARKDDPVFNVRFVQFVENQPCLWNYTHPGYSKKEDVQRAWQQVA
NDIKDTVRNCRERWRTIRSSFLRSLKLARTQTGRGKRKYYLSKYLQFLVP
FTKSRSCHKQLPGMVLRKPGQAATAQQEDEVVAAEEEAKVSDGEMPLDVQ
VSEEEHRRNQEQDREQPTACLPLRLHSIKVEHDSSNANQQLERMVSQQSL
VSVPAAALGNHLGWSDLTQWFKGHGSGHHKLTTTTTTPTSPPPPPQPATS
ALSVFTGGPGGGGSQPDADYSFLISLHPYIKEMNGKQNRKFRQKVVGLID
DILDNKDV*

BS27571.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4404-PA 308 CG4404-PA 1..308 1..308 1642 100 Plus
CG3838-PB 435 CG3838-PB 54..391 11..303 201 23.5 Plus
CG3838-PA 435 CG3838-PA 54..391 11..303 201 23.5 Plus
CG3919-PC 318 CG3919-PC 18..265 15..306 180 22.2 Plus
CG3919-PB 302 CG3919-PB 18..96 15..98 178 38.1 Plus