BS27572.complete Sequence
2213 bp assembled on 2013-09-16
GenBank Submission: KX801857
> BS27572.complete
GAAGTTATCAGTCGACATGGTTGTAGTTCCAGCTCTAGGCGCCGCCGCCG
TTTCCGTGGGCGGTCTGCTCTTCAAGGCGAGTGCCGCATCTAAGGCGGCG
GCGGCAGCGGGCGTAGCAGCGGCAGGAGCCTCCAAATTGGGCCTGGCCAT
CGCCGGTGCTATCAAACTGGCCACCGCTGTTATTGGCGTTGGTAAACTGA
CCATATTGCCCTTTCTGATAGCGGCTATAGCCTACTATAATTACGATCTC
TTCGATCCGGAGAATCGACCATTCAACGTGCAGCAAGTGGATTTGGCCTA
TGATTTCATCATCATCGGTGGCGGTTCGGCGGGTACTGTTCTGGCCTCCA
GACTATCGGAGATACCGCACTGGAAGATCCTGCTCCTGGAGGCCGGTGGA
CATGAGACGGAAATCTCCGATGTGCCGCTGTTGTCGTTATATTTGCATAA
AAGCAAAATGGATTGGAAGTATCGCACCCAACCACAACCGACAGCCTGTC
AGGCAATGAAGGACAAGCGCTGCTGTTGGACGAGAGGCAAAGTTTTGGGC
GGCAGTTCGGTGCTAAATACGATGCTCTACATCAGGGGAAATAAACGAGA
CTTTGACCAGTGGGCGGATTTTGGAAATCCCGGTTGGTCGTACGAGGATA
TACTGCCCTATTTCCGGAAGTCTGAGGATCAGCGGAATCCCTATTTGGCC
AGGAACAAACGCTACCATGGCACAGGAGGCCTTTGGACCGTCCAGGACGC
GCCATACAACACGCCCATTGGACCGGCATTTCTGCAGGCTGGCGAGGAAA
TGGGCTACGATATCGTCGACGTGAATGGAGAGCAGCAGACGGGTTTCGGT
TTCTATCAGTTCAACATGCGTCGCGGTTCCCGCAGCTCCACGGCCAAATC
ATTTTTGCGACCAGCACGTCTGCGACCCAATCTTCATGTGGCCCTCTTTT
CGCATGTCACCAAGGTCCTAACCGATCCCCATACGAAACGAGCGACTGGA
GTTCAATTTATACGAGACGGAAGGCTGCAAAATGTATATGCCACCAGGGA
GGTGATCCTGTCGGCAGGAGCCATTGGATCGCCGCATCTGATGATGTTGT
CGGGCATTGGACACGGCGAGGAATTGGGCAGAGTGGGCATACCACTGGTG
CAACATCTGCCGGGCGTGGGACAGAATCTACAGGATCACATTGCCGTTGG
CGGCATAGCCTTCCTCATCGACTATCCCATTTCGATTGTGATGAAGAGAA
TGGTTAATATCAATACCGCACTTAGGTATGCCATCACAGAAGATGGTCCT
TTGACCTCCAGCATTGGTTTGGAGGCGGTGGCTTTTATTAACACAAAGTA
CGCCAATGCCAGTGACGATTGGCCGGATATGAACTTTATGATGACCTCGG
CATCGGTGATGTCGGATGGCGGTAGCCAGGTGAAGACTGCCCACGGTCTG
ACCGATGAGTTCTACCAGGAGGTATTCGGGGAGGTTAACAATCGCGATGT
CTTTGGCGTTTTCCCCATGATGCTGAGACCGAAGAGCAGGGGCTACATAA
AGCTGGCGTCGAAAAATCCCCTCAGATATCCGTTGCTCTATCACAACTAC
CTCACCCATCCGGATGATGTGAATGTGCTGAGGGAGGGCGTCAAGGCGGC
GGTGGCCATGGGTGAAACGCAGGCTATGAAGAGATTCGGTGCTAGATATT
GGAACAAACCAGTGCCGAATTGCAAGCACCTGACCCTGTACACCGATGAC
TATTGGAACTGCTTTATCAGGCAGTATACGATGACGATATACCATATGAG
TGGTACGGCCAAAATGGGACCACCCACGGATCCTTGGGCAGTGGTGGATC
CCCAGCTGAGAGTTTATGGCATACCCGGACTGAGAGTTATAGATGCCAGC
ATAATGCCGGCCATTACGAATGGCAATATTCACGCACCGGTGGTGATGAT
CGGCGAGAAGGGTGCGGATATGATAAAGCAATTGTGGCTAACCCCCACAA
CGGCGCCAGTGGGGGTTCAAGGTCAGGGGCCGAGCCCGCGTCAAGGTCAC
AACACGAGCCCAGCGCCACCACCGCGAACCCAGTGGCGGAGTAAACGATC
ATTAAACTCCACGGAAGCAGACACAGAAACGGAGAACAGTGAAAACTTGG
ACATTGGAACATCACCTGTACATCAATGGCCACTGCCAAGGTCGTAGAAG
CTTTCTAGACCAT
BS27572.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9514-RA | 2181 | CG9514-PA | 1..2181 | 17..2197 | 10890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:05:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9514-RA | 3099 | CG9514-RA | 417..2598 | 16..2197 | 10895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:05:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 14886453..14887926 | 2197..724 | 7370 | 100 | Minus |
| X | 23542271 | X | 14895760..14896218 | 474..16 | 2295 | 100 | Minus |
| X | 23542271 | X | 14888224..14888476 | 726..474 | 1250 | 99.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:05:28 has no hits.
BS27572.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:31:45 Download gff for
BS27572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9514-RA | 418..2598 | 17..2197 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:41:00 Download gff for
BS27572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9514-RA | 418..2598 | 17..2197 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:41:00 Download gff for
BS27572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 14886453..14887924 | 726..2197 | 100 | <- | Minus |
| X | 14888225..14888475 | 475..725 | 99 | <- | Minus |
| X | 14895760..14896217 | 17..474 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:31:45 Download gff for
BS27572.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 14780486..14781957 | 726..2197 | 100 | <- | Minus |
| arm_X | 14782258..14782508 | 475..725 | 99 | <- | Minus |
| arm_X | 14789793..14790250 | 17..474 | 100 | | Minus |
BS27572.pep Sequence
Translation from 16 to 2196
> BS27572.pep
MVVVPALGAAAVSVGGLLFKASAASKAAAAAGVAAAGASKLGLAIAGAIK
LATAVIGVGKLTILPFLIAAIAYYNYDLFDPENRPFNVQQVDLAYDFIII
GGGSAGTVLASRLSEIPHWKILLLEAGGHETEISDVPLLSLYLHKSKMDW
KYRTQPQPTACQAMKDKRCCWTRGKVLGGSSVLNTMLYIRGNKRDFDQWA
DFGNPGWSYEDILPYFRKSEDQRNPYLARNKRYHGTGGLWTVQDAPYNTP
IGPAFLQAGEEMGYDIVDVNGEQQTGFGFYQFNMRRGSRSSTAKSFLRPA
RLRPNLHVALFSHVTKVLTDPHTKRATGVQFIRDGRLQNVYATREVILSA
GAIGSPHLMMLSGIGHGEELGRVGIPLVQHLPGVGQNLQDHIAVGGIAFL
IDYPISIVMKRMVNINTALRYAITEDGPLTSSIGLEAVAFINTKYANASD
DWPDMNFMMTSASVMSDGGSQVKTAHGLTDEFYQEVFGEVNNRDVFGVFP
MMLRPKSRGYIKLASKNPLRYPLLYHNYLTHPDDVNVLREGVKAAVAMGE
TQAMKRFGARYWNKPVPNCKHLTLYTDDYWNCFIRQYTMTIYHMSGTAKM
GPPTDPWAVVDPQLRVYGIPGLRVIDASIMPAITNGNIHAPVVMIGEKGA
DMIKQLWLTPTTAPVGVQGQGPSPRQGHNTSPAPPPRTQWRSKRSLNSTE
ADTETENSENLDIGTSPVHQWPLPRS*
BS27572.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9514-PA | 726 | CG9514-PA | 1..726 | 1..726 | 3838 | 100 | Plus |
| CG9503-PA | 626 | CG9503-PA | 11..624 | 44..661 | 1792 | 54.9 | Plus |
| CG9518-PC | 703 | CG9518-PC | 6..619 | 43..659 | 1768 | 53.2 | Plus |
| CG9518-PB | 703 | CG9518-PB | 6..619 | 43..659 | 1768 | 53.2 | Plus |
| CG9518-PA | 703 | CG9518-PA | 6..619 | 43..659 | 1768 | 53.2 | Plus |
