Clone BS27574 Report

Search the DGRC for BS27574

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:74
Vector:pDNR-Dual
Associated Gene/TranscriptMED8-RA
Protein status:BS27574.pep: full length peptide match
Sequenced Size:791

Clone Sequence Records

BS27574.complete Sequence

791 bp assembled on 2011-09-12

GenBank Submission: KX801417

> BS27574.complete
GAAGTTATCAGTCGACATGCAGCGCGACGAAAAGCTTTTTGAGCTGACGC
TGGATACGGTCCTTCAGCGTCTGAACGACCTGAAGCTGGCGGTTCTCTCG
ATGATCCAAAAACTTGAGCTAGAGTACGAGACCATCAACTGGCCGACTTT
CCTGGACAACTTTGCCATTATCTCAAGTCACTTGACGGGATTGACGAAAA
TCTTGGCAAAGGAGCAGTGTCCGCCGCTAAGAAATCGAACGGTCCTGCCC
CTTCTGGTCTCCATGGACCGGGATGACACCCTCATCAACATCACAGAGGG
TCGGGTGCCAGTCTTTTCACACGACATTGTTCCAGACTATTTGAGAACTC
GGCCGGATCCGATTACGGAACAGAAAATGCTGCAGAACGAACAGAAGGCG
GCGAACCTCACCAACGACGCTGCCATGAAACAGGTCACTCAATACAACAA
GGTCGTCTCCCACGTCCTGGATATGGTCAGCAAAGCGCGCGAGGAGTGGG
AAATCGAGAGCTCTTCGCGCACCGGCATCCAGCAGACGAGTAGCATGGCC
GACACACAGCTCCTGGTGGCCGCCGTGGGTATGGGAAAAGGACTCAAGCT
GACCAACTATGGACCCGGACCTGGCATGATGGTACCGCCTTCAATTCGAG
CACCCTCGCCAATGGGTGGACCCGCTATGAGTCCCGGCAACGTGCAGCAG
CAGCTGGGAAAGGCGCCATCGGCTGTGAAAACAAACATCAAGTCCGCAAA
TCAAGTGCATCCGTTCTCTCGATAAAAGCTTTCTAGACCAT

BS27574.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:11
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-RA 759 CG13867-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:12
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-RA 963 CG13867-RA 85..845 17..777 3805 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:10
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 20325962..20326722 777..17 3805 100 Minus
Blast to na_te.dros performed on 2014-11-27 06:51:10 has no hits.

BS27574.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:20 Download gff for BS27574.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..841 17..773 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:30 Download gff for BS27574.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..841 17..773 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:08 Download gff for BS27574.complete
Subject Subject Range Query Range Percent Splice Strand
MED8-RA 85..841 17..773 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:08 Download gff for BS27574.complete
Subject Subject Range Query Range Percent Splice Strand
2R 20325966..20326722 17..773 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:30 Download gff for BS27574.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 16213471..16214227 17..773 100   Minus

BS27574.pep Sequence

Translation from 16 to 774

> BS27574.pep
MQRDEKLFELTLDTVLQRLNDLKLAVLSMIQKLELEYETINWPTFLDNFA
IISSHLTGLTKILAKEQCPPLRNRTVLPLLVSMDRDDTLINITEGRVPVF
SHDIVPDYLRTRPDPITEQKMLQNEQKAANLTNDAAMKQVTQYNKVVSHV
LDMVSKAREEWEIESSSRTGIQQTSSMADTQLLVAAVGMGKGLKLTNYGP
GPGMMVPPSIRAPSPMGGPAMSPGNVQQQLGKAPSAVKTNIKSANQVHPF
SR*

BS27574.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:03
Subject Length Description Subject Range Query Range Score Percent Strand
MED8-PA 252 CG13867-PA 1..252 1..252 1283 100 Plus