BS27578.complete Sequence
860 bp assembled on 2011-09-12
GenBank Submission: KX804677
> BS27578.complete
GAAGTTATCAGTCGACATGAGCCTGATTTGCCGTCGATTTGGCTCTTCCT
TGAGGCCCATCGCCCGCACACTCCACCCACTGCTCGCCAGCAAAATCATC
GAAGCACAAAGGTCACCGCTGAAAAACAAGCGATTTTACGCCGGCAAGAG
AATGGATTTAAAGTATCTAAATCAAAAGGAGGCCATCGCCGTGGACCAGG
AACTATTCAACGATTACAAGTTCAGTGTGGATCAGCTAATGGAGCTGGCG
GGCTTGAGCTGCGCCCATGCTGTGGCCAAATGCTTCCCGGCAGAGAAGCA
TCCACGAATTCTCGTTTGCTGTGGACCAGGAAACAATGGAGGCGACGGCT
TGGTTGCCGCCCGCCACCTCGCCCTCATGGGCTACACACCCACCATCTAC
TATCCCAAGCCGACGGCCAAGCCGCTCTTCGAGAACCTCAGCCACCAGTG
CCAACAGATGGACATCTGCGACGTGAAGGAGTGTCCGTCGGTGGAGAGTG
CCGCCCGTGACTATGATCTCATTCTGGATGCGCTCTTCGGATTCAGCTTC
AAGCCGCCGGTGCGAGCGGACTTTGTCGCCGTCGTGGAACTAATGCAGCA
GACCAAACTGCCAATTGCCAGCGTGGACATTCCCAGCGGCTGGGATGTGG
AGAAGGGCAAGCTGACTGAATGCGACGTGGAGCCGGCTCTGCTCATTTCC
CTCACTGCGCCGAAACTCTGTGCCCGCCAATTTCGCGGCGAACATCACTA
CTTGGGCGGCAGATTCGTGCCGCCCGCCCTGCAGCGCAAATACGAACTGA
ATCTGCCCGTTTATCCGGGCAACGAGCTGTGCGTCAAGCTGTGAAAGCTT
TCTAGACCAT
BS27578.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:51:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2974-RB | 693 | CG2974-PB | 1..693 | 152..844 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:51:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2974-RB | 1200 | CG2974-RB | 107..934 | 17..844 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:51:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10085461..10086065 | 621..17 | 3025 | 100 | Minus |
| X | 23542271 | X | 10085180..10085405 | 844..619 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:51:37 has no hits.
BS27578.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:20 Download gff for
BS27578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 107..933 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:56:43 Download gff for
BS27578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 107..933 | 17..843 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:56:20 Download gff for
BS27578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2974-RB | 107..933 | 17..843 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:56:20 Download gff for
BS27578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10085181..10085402 | 622..843 | 100 | <- | Minus |
| X | 10085461..10086065 | 17..621 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:56:43 Download gff for
BS27578.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 9979214..9979435 | 622..843 | 100 | <- | Minus |
| arm_X | 9979494..9980098 | 17..621 | 100 | | Minus |
BS27578.pep Sequence
Translation from 16 to 843
> BS27578.pep
MSLICRRFGSSLRPIARTLHPLLASKIIEAQRSPLKNKRFYAGKRMDLKY
LNQKEAIAVDQELFNDYKFSVDQLMELAGLSCAHAVAKCFPAEKHPRILV
CCGPGNNGGDGLVAARHLALMGYTPTIYYPKPTAKPLFENLSHQCQQMDI
CDVKECPSVESAARDYDLILDALFGFSFKPPVRADFVAVVELMQQTKLPI
ASVDIPSGWDVEKGKLTECDVEPALLISLTAPKLCARQFRGEHHYLGGRF
VPPALQRKYELNLPVYPGNELCVKL*
BS27578.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:12:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2974-PB | 230 | CG2974-PB | 1..230 | 46..275 | 1230 | 100 | Plus |
