BS27580.complete Sequence
944 bp assembled on 2011-09-12
GenBank Submission: KX802128
> BS27580.complete
GAAGTTATCAGTCGACATGACCATAAGGATTGCGAGGCGAAATATGTTTT
TCATACACGCCCCCGAGGAGGAGAAGTGCATGGAGGCGCAGCTGGACATC
CTTATGAAGATCAACTCCGGTGAATATCGGCTGGTGAAGAAGAACAAGCG
CAGTTCCGTTTGGAACGTCTACCGGGAAATCGCTCGTCCGGACGGCACCA
AGTTGAAATGGCGATACTTCTGCATGGGCTGCAAGCGTGTGATGCAGAGC
ACCGGCGGCACCACCTCCAATCTGCGCATCCACAAGTGCCACGTACGGTA
TATCAAGCAGAACGGCCATCTCACCGACGGCAGTCACTCCTACGACCATG
ATCCCGCGCCACCAGCTAGCCAACCGTCGCCGCGCGTCCAGAAACCGAAG
ACCAGGCGGCCGACATCCTATTCTACGCAGTGTGAGCAGTTCTATGAGGT
CACCATGGATCCGGAGACCCAGTACAGCGATCTGGATGATGAGATTGAGG
CTTCTTTGGAGGAGGAGCAGACTCTGAAATCAAAACGTGAATTGGAATCC
TCCCACTCCAGACCCCTGCTGAAGCTCTTCTCCGAGGAGAACTTGTCGAC
TGAACCAGAGGAGCCGGAAGACGAGATTGAGATTGTGGAGGCGGAAGATC
AGGTGCCCATCGAGCTGGACCTATGTGACATCCAACATACTACATCCGAT
GCTGGCGGTGAGGCAATCGAACCCAAGCCAACGGAAAGTGTCGCCCAGTT
CGATGCCAATGCCATTTCCGAAGCGGAATCCTATGCCAAAGCCTGGGCTC
ACGCCTTCCTGCGGCTGAACGAGGACCAAAAGTTCTACGCCAAGCGCTCC
ATAGATGAACTACTGGTCTTGGGTCGTCTGGAGCGACTGAGCATTTCCAC
GGTCACATCCTTGACCACAAACCTGTAGAAGCTTTCTAGACCAT
BS27580.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11560-RA | 912 | CG11560-PA | 1..912 | 17..928 | 4560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11560-RA | 1101 | CG11560-RA | 64..975 | 17..928 | 4560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 12120082..12120588 | 17..523 | 2535 | 100 | Plus |
3L | 28110227 | 3L | 12120655..12121059 | 524..928 | 2025 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 06:41:11 has no hits.
BS27580.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:05 Download gff for
BS27580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11560-RA | 20..931 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:44 Download gff for
BS27580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11560-RA | 64..975 | 17..928 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:44 Download gff for
BS27580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11560-RA | 64..975 | 17..928 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:44 Download gff for
BS27580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 12120082..12120588 | 17..523 | 100 | -> | Plus |
3L | 12120655..12121059 | 524..928 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:44 Download gff for
BS27580.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 12113182..12113688 | 17..523 | 100 | -> | Plus |
arm_3L | 12113755..12114159 | 524..928 | 100 | | Plus |
BS27580.pep Sequence
Translation from 16 to 927
> BS27580.pep
MTIRIARRNMFFIHAPEEEKCMEAQLDILMKINSGEYRLVKKNKRSSVWN
VYREIARPDGTKLKWRYFCMGCKRVMQSTGGTTSNLRIHKCHVRYIKQNG
HLTDGSHSYDHDPAPPASQPSPRVQKPKTRRPTSYSTQCEQFYEVTMDPE
TQYSDLDDEIEASLEEEQTLKSKRELESSHSRPLLKLFSEENLSTEPEEP
EDEIEIVEAEDQVPIELDLCDIQHTTSDAGGEAIEPKPTESVAQFDANAI
SEAESYAKAWAHAFLRLNEDQKFYAKRSIDELLVLGRLERLSISTVTSLT
TNL*
BS27580.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11560-PA | 303 | CG11560-PA | 1..303 | 1..303 | 1581 | 100 | Plus |
ssp-PA | 368 | CG17153-PA | 14..86 | 23..97 | 210 | 54.7 | Plus |
CG34116-PA | 211 | CG34116-PA | 7..123 | 27..122 | 184 | 36.8 | Plus |
CG34116-PA | 211 | CG34116-PA | 99..207 | 195..296 | 162 | 33.9 | Plus |