Clone BS27580 Report

Search the DGRC for BS27580

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:275
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG11560-RA
Protein status:BS27580.pep: gold
Sequenced Size:944

Clone Sequence Records

BS27580.complete Sequence

944 bp assembled on 2011-09-12

GenBank Submission: KX802128

> BS27580.complete
GAAGTTATCAGTCGACATGACCATAAGGATTGCGAGGCGAAATATGTTTT
TCATACACGCCCCCGAGGAGGAGAAGTGCATGGAGGCGCAGCTGGACATC
CTTATGAAGATCAACTCCGGTGAATATCGGCTGGTGAAGAAGAACAAGCG
CAGTTCCGTTTGGAACGTCTACCGGGAAATCGCTCGTCCGGACGGCACCA
AGTTGAAATGGCGATACTTCTGCATGGGCTGCAAGCGTGTGATGCAGAGC
ACCGGCGGCACCACCTCCAATCTGCGCATCCACAAGTGCCACGTACGGTA
TATCAAGCAGAACGGCCATCTCACCGACGGCAGTCACTCCTACGACCATG
ATCCCGCGCCACCAGCTAGCCAACCGTCGCCGCGCGTCCAGAAACCGAAG
ACCAGGCGGCCGACATCCTATTCTACGCAGTGTGAGCAGTTCTATGAGGT
CACCATGGATCCGGAGACCCAGTACAGCGATCTGGATGATGAGATTGAGG
CTTCTTTGGAGGAGGAGCAGACTCTGAAATCAAAACGTGAATTGGAATCC
TCCCACTCCAGACCCCTGCTGAAGCTCTTCTCCGAGGAGAACTTGTCGAC
TGAACCAGAGGAGCCGGAAGACGAGATTGAGATTGTGGAGGCGGAAGATC
AGGTGCCCATCGAGCTGGACCTATGTGACATCCAACATACTACATCCGAT
GCTGGCGGTGAGGCAATCGAACCCAAGCCAACGGAAAGTGTCGCCCAGTT
CGATGCCAATGCCATTTCCGAAGCGGAATCCTATGCCAAAGCCTGGGCTC
ACGCCTTCCTGCGGCTGAACGAGGACCAAAAGTTCTACGCCAAGCGCTCC
ATAGATGAACTACTGGTCTTGGGTCGTCTGGAGCGACTGAGCATTTCCAC
GGTCACATCCTTGACCACAAACCTGTAGAAGCTTTCTAGACCAT

BS27580.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG11560-RA 912 CG11560-PA 1..912 17..928 4560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG11560-RA 1101 CG11560-RA 64..975 17..928 4560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:41:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12120082..12120588 17..523 2535 100 Plus
3L 28110227 3L 12120655..12121059 524..928 2025 100 Plus
Blast to na_te.dros performed on 2014-11-27 06:41:11 has no hits.

BS27580.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:05 Download gff for BS27580.complete
Subject Subject Range Query Range Percent Splice Strand
CG11560-RA 20..931 17..928 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:44 Download gff for BS27580.complete
Subject Subject Range Query Range Percent Splice Strand
CG11560-RA 64..975 17..928 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:44 Download gff for BS27580.complete
Subject Subject Range Query Range Percent Splice Strand
CG11560-RA 64..975 17..928 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:44 Download gff for BS27580.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12120082..12120588 17..523 100 -> Plus
3L 12120655..12121059 524..928 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:44 Download gff for BS27580.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12113182..12113688 17..523 100 -> Plus
arm_3L 12113755..12114159 524..928 100   Plus

BS27580.pep Sequence

Translation from 16 to 927

> BS27580.pep
MTIRIARRNMFFIHAPEEEKCMEAQLDILMKINSGEYRLVKKNKRSSVWN
VYREIARPDGTKLKWRYFCMGCKRVMQSTGGTTSNLRIHKCHVRYIKQNG
HLTDGSHSYDHDPAPPASQPSPRVQKPKTRRPTSYSTQCEQFYEVTMDPE
TQYSDLDDEIEASLEEEQTLKSKRELESSHSRPLLKLFSEENLSTEPEEP
EDEIEIVEAEDQVPIELDLCDIQHTTSDAGGEAIEPKPTESVAQFDANAI
SEAESYAKAWAHAFLRLNEDQKFYAKRSIDELLVLGRLERLSISTVTSLT
TNL*

BS27580.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:10:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG11560-PA 303 CG11560-PA 1..303 1..303 1581 100 Plus
ssp-PA 368 CG17153-PA 14..86 23..97 210 54.7 Plus
CG34116-PA 211 CG34116-PA 7..123 27..122 184 36.8 Plus
CG34116-PA 211 CG34116-PA 99..207 195..296 162 33.9 Plus