BS27585.complete Sequence
1958 bp assembled on 2011-10-14
GenBank Submission: KX802774
> BS27585.complete
GAAGTTATCAGTCGACATGTCGGCTTCTGCGAACTTGGCAAACGTTTACG
CGGAGCTAATGCGGCGGTGTGGCGAGTCATACACGATCACCTATGGAGCG
CCACCCACCTACTTGGTGAGCATGGTGGGGGCTGCGGAAGCTGGCAAGAA
GATTGTGCTGGTCTTTAAGGAGGATCGCAATGGAGCAGTGGCGAGACTCC
GGACCACGCCCACCAGGGCAGCCCCAAAAAAAGAGGGCTCTGCGGACTTG
GATCTGACGGGAAGTCCTTTGAAGGACGACTGCCTGGTGGACGCCATAGC
CGACTTGTCCATCGACCTGCAGCTGGATCACTCGAATCCCTGGAAGCTGG
AGGAGGAATATCAACGCGGAATACCCGTGGACAAGGCTAGGTCCATCGTG
TGCTCCGAGTTCCTGCAGCTGGCCGAGGGACTCGGATCCGTGTGGTTTTT
GTGCGACGGCAGTGATCTCGGGCAGACTCAGTTGCTCCAGTACGAGTTCA
ACCCTACGCACTTCTCCAGGGGAATACTTAGCTACCAGGGTGTGCGCCCT
GCTTACTTAGTAACCTCGCAAGCCCTGGTGCGCCATCATGGCAAGACACC
GGATGAAACTCTCATTGAAAATAGCTACCAGGTCAATCCCCACATGAGAC
TACGCTGCTCCTGGACCTCTAGTGCTGCACTTCCGCTCCTGGTGAACCTG
AACGACTGCGATGTGGCTTTGAATCACACTTTTCGCGTGGGCGACTGCGG
TCCTTTGACGCAGGACTTTATGAATCAGCTGCGCATTCTGGTCTACATAC
GCGAGGACATCGTCTCCTACCACACGGATGTCAAGCAGGGCGTCTCTCGG
GATCCCACCTATCGTTGTGGCAGTGGCATTGACATGGACGAGCTGCGCGA
GTCCATTAATCAGACAATGACAGATGTCTCTGGCCTTATAGGTCGGTATA
GCATCAGCAATGCGGAGTTTGACATCGAAGATGTGGTGCAGAGGGCCAAG
GTTCGCCAGCTCACGGATCTAACCGATAAGCTTTGGGAGCTGCTCAAGTG
CTGCCACTCCTACAAGGATCTCAAAATTGCCTTTAGTATGCTCTTCCAAT
GTGCTGCACGGTGTAACATAGTAAACACGCCTACTAACAAAAATCGACTT
GCCAAGATTATCACCGAGTTGGCCAACCGTCGTCTGGCCATGCCTTGTTT
AAGTGGGGCCGAGCCTCTGGAACTGCTTTTGGAAATTGGCCTGGAGAAGT
TGTACAAGGACTACGAGTTTATCTACACCGAGAGCAAGATGTGCAGCACC
AATCTGTTGAAGGATGACTCCAGCGGAGCGTCGATGGACGATGGTTCTCC
CCAGAATCTGCCCCAGCTTCGAAAATCCCTGCACAATGCGGTCAGGGGTG
ATCCGACCCCTGGAGCTGGAATGCGAAAGACGCTGCTGCATCATCACGGC
GCTGTCAATTCGCGGAGTACAAAATATGCCGGTAGCGACGATGATGCTGG
GTTCAAAAACAGCCATTTCGACGAGCACGAGAGTACGGAGAGAATCTCAA
AGTTGTTTCAGATTCACTGCACCTTAGAGCATCTCCTGATGATGCACATC
CACTTAAATCTGGCAAATGTTTACAACGATGTCTGTTCTGAATTGCTGAA
GAAACCGCCTAAATTAGTAGAATCCATCGATGATCAGCTAAGTGATGTTA
TGGACATTCGCCTGTCTGCCCACTATGTGAGGGATCACTTGGATGGCAAG
GATCCCTACTCCCGGCACATTACCATGCGTTCGCACAACAAGTTCCGCGA
ACTAAAGACCACCTTCTATTTCAATTCGGAAAACATTTGTCCGCCGAACT
TGGCTCAGTGTTTCCAGTGTGATGACAAGGAGATGGTCAAGGAGCGCACA
TATCATTCCTGGATATATCACAAGATTCGCTCACTTAAGTAAAAGCTTTC
TAGACCAT
BS27585.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zwilch-RA | 1926 | CG18729-PA | 1..1926 | 17..1942 | 9630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zwilch-RA | 2232 | CG18729-RA | 88..2013 | 17..1942 | 9630 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31212183..31213289 | 1123..17 | 5535 | 100 | Minus |
| 3R | 32079331 | 3R | 31211630..31212125 | 1619..1124 | 2480 | 100 | Minus |
| 3R | 32079331 | 3R | 31211314..31211569 | 1874..1619 | 1280 | 100 | Minus |
| 3R | 32079331 | 3R | 31211185..31211253 | 1942..1874 | 345 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 16:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmir\TRIM | 3111 | Dmir\TRIM DMTRIM 3126bp Derived from X59239 (Rel. 35, Last updated, Version 3). | 1831..1881 | 504..554 | 120 | 70.6 | Plus |
| Dsim\ninja | 6644 | Dsim\ninja DSRN 6644bp Derived from D83207 (Rel. 53, Last updated, Version 4). | 1519..1570 | 1476..1424 | 118 | 71.7 | Minus |
BS27585.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:12 Download gff for
BS27585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zwilch-RA | 62..1985 | 17..1940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:54:04 Download gff for
BS27585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| zwilch-RA | 88..2011 | 17..1940 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:12:53 Download gff for
BS27585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zwilch-RA | 88..2011 | 17..1940 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:12:53 Download gff for
BS27585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31211187..31211252 | 1875..1940 | 100 | <- | Minus |
| 3R | 31211314..31211568 | 1620..1874 | 100 | <- | Minus |
| 3R | 31211630..31212125 | 1124..1619 | 100 | <- | Minus |
| 3R | 31212183..31213289 | 17..1123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:54:04 Download gff for
BS27585.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27036909..27036974 | 1875..1940 | 100 | <- | Minus |
| arm_3R | 27037036..27037290 | 1620..1874 | 100 | <- | Minus |
| arm_3R | 27037352..27037847 | 1124..1619 | 100 | <- | Minus |
| arm_3R | 27037905..27039011 | 17..1123 | 100 | | Minus |
BS27585.pep Sequence
Translation from 16 to 1941
> BS27585.pep
MSASANLANVYAELMRRCGESYTITYGAPPTYLVSMVGAAEAGKKIVLVF
KEDRNGAVARLRTTPTRAAPKKEGSADLDLTGSPLKDDCLVDAIADLSID
LQLDHSNPWKLEEEYQRGIPVDKARSIVCSEFLQLAEGLGSVWFLCDGSD
LGQTQLLQYEFNPTHFSRGILSYQGVRPAYLVTSQALVRHHGKTPDETLI
ENSYQVNPHMRLRCSWTSSAALPLLVNLNDCDVALNHTFRVGDCGPLTQD
FMNQLRILVYIREDIVSYHTDVKQGVSRDPTYRCGSGIDMDELRESINQT
MTDVSGLIGRYSISNAEFDIEDVVQRAKVRQLTDLTDKLWELLKCCHSYK
DLKIAFSMLFQCAARCNIVNTPTNKNRLAKIITELANRRLAMPCLSGAEP
LELLLEIGLEKLYKDYEFIYTESKMCSTNLLKDDSSGASMDDGSPQNLPQ
LRKSLHNAVRGDPTPGAGMRKTLLHHHGAVNSRSTKYAGSDDDAGFKNSH
FDEHESTERISKLFQIHCTLEHLLMMHIHLNLANVYNDVCSELLKKPPKL
VESIDDQLSDVMDIRLSAHYVRDHLDGKDPYSRHITMRSHNKFRELKTTF
YFNSENICPPNLAQCFQCDDKEMVKERTYHSWIYHKIRSLK*
BS27585.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:27:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zwilch-PA | 641 | CG18729-PA | 1..641 | 1..641 | 3382 | 100 | Plus |
