BS27587.complete Sequence
1163 bp assembled on 2011-09-12
GenBank Submission: KX802839
> BS27587.complete
GAAGTTATCAGTCGACATGTGTGACGATGATGCGGGTGCATTAGTTATCG
ACAACGGATCGGGCATGTGCAAAGCCGGCTTCGCCGGTGATGACGCTCCC
CGTGCTGTCTTCCCCTCAATTGTGGGTCGTCCCCGACACCAGGGTGTGAT
GGTGGGTATGGGTCAGAAGGACTCGTACGTGGGCGACGAGGCGCAAAGCA
AGCGCGGTATCCTGACGCTGAAGTACCCCATCGAGCACGGCATCATCACG
AACTGGGACGACATGGAGAAGATCTGGCATCACACCTTCTACAACGAGCT
GCGCGTGGCCCCCGAGGAGCATCCAGTATTATTGACCGAGGCTCCACTGA
ACCCCAAGGCCAATCGCGAGAAGATGACCCAGATCATGTTCGAGACCTTC
AACTCGCCGGCCATGTACGTGGCCATCCAGGCCGTGCTCTCCCTGTACGC
CTCCGGTCGTACCACCGGTATTGTGCTGGACTCCGGCGATGGTGTCTCCC
ACACCGTGCCCATCTATGAGGGCTTCGCCCTGCCCCACGCCATTCTGCGT
CTGGATCTGGCTGGTCGCGATCTGACCGATTACCTGATGAAGATCCTGAC
GGAGCGCGGCTACAGCTTCACCACCACCGCCGAGCGTGAGATCGTGCGCG
ACATCAAGGAGAAGCTGTGCTACGTGGCTCTGGACTTCGAGCAGGAGATG
GCCACCGCTGCCGCCTCCACCTCGCTGGAGAAGTCGTACGAGTTGCCTGA
CGGCCAGGTGATCACCATTGGCAACGAGCGCTTCCGCTGCCCCGAGGCTC
TGTTCCAGCCCTCGTTCCTGGGCATGGAGTCGTGCGGCATCCACGAGACC
GTCTACAACTCGATCATGAAGTGCGACGTGGACATCCGCAAGGATCTGTA
TGCCAACTCTGTGCTGTCCGGCGGTACCACCATGTACCCTGGTATTGCCG
ATCGTATGCAGAAGGAGATCACTGCCCTGGCCCCATCGACCATCAAGATC
AAGATCATTGCGCCACCCGAGAGGAAGTACTCCGTCTGGATCGGTGGCTC
CATCCTGGCCTCGCTGTCCACCTTCCAGCAGATGTGGATCTCGAAGCAGG
AGTACGACGAGTCCGGCCCCGGAATCGTTCACCGCAAATGCTTTTAAAAG
CTTTCTAGACCAT
BS27587.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act88F-RA | 1131 | CG5178-PA | 1..1131 | 17..1147 | 5655 | 100 | Plus |
| Act79B-RB | 1131 | CG7478-PB | 34..1131 | 50..1147 | 3870 | 90.2 | Plus |
| Act79B-RA | 1131 | CG7478-PA | 34..1131 | 50..1147 | 3870 | 90.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act88F-RA | 1595 | CG5178-RA | 95..1225 | 17..1147 | 5655 | 100 | Plus |
| Act79B-RB | 1619 | CG7478-RB | 175..1272 | 50..1147 | 3870 | 90.2 | Plus |
| Act79B-RA | 1543 | CG7478-RA | 99..1196 | 50..1147 | 3870 | 90.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15440616..15441543 | 17..944 | 4640 | 100 | Plus |
| 3R | 32079331 | 3R | 13426604..13427734 | 17..1147 | 3795 | 89 | Plus |
| 2R | 25286936 | 2R | 20944849..20945934 | 62..1147 | 3705 | 89.4 | Plus |
| X | 23542271 | X | 5902698..5903828 | 17..1147 | 3660 | 88.2 | Plus |
| 3L | 28110227 | 3L | 21985384..21986277 | 50..943 | 3225 | 90.7 | Plus |
| 2R | 25286936 | 2R | 6014270..6015400 | 1147..17 | 3105 | 85 | Minus |
| 3R | 32079331 | 3R | 15441601..15441807 | 941..1147 | 1035 | 100 | Plus |
| 3L | 28110227 | 3L | 21986637..21986843 | 941..1147 | 660 | 87.9 | Plus |
| 2R | 25286936 | 2R | 16774750..16774997 | 335..582 | 265 | 73.8 | Plus |
| 2R | 25286936 | 2R | 16775178..16775338 | 775..935 | 205 | 75.2 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:00:09 has no hits.
BS27587.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:27 Download gff for
BS27587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 76..1204 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:57 Download gff for
BS27587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 95..1223 | 17..1145 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:28 Download gff for
BS27587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Act88F-RA | 95..1223 | 17..1145 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:28 Download gff for
BS27587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15440616..15441540 | 17..941 | 100 | -> | Plus |
| 3R | 15441602..15441805 | 942..1145 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:57 Download gff for
BS27587.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11266338..11267262 | 17..941 | 100 | -> | Plus |
| arm_3R | 11267324..11267527 | 942..1145 | 100 | | Plus |
BS27587.pep Sequence
Translation from 16 to 1146
> BS27587.pep
MCDDDAGALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQ
KDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPE
EHPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRTT
GIVLDSGDGVSHTVPIYEGFALPHAILRLDLAGRDLTDYLMKILTERGYS
FTTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVIT
IGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANSVL
SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL
STFQQMWISKQEYDESGPGIVHRKCF*
BS27587.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Act88F-PA | 376 | CG5178-PA | 1..376 | 1..376 | 1968 | 100 | Plus |
| Act87E-PC | 376 | CG18290-PC | 1..376 | 1..376 | 1936 | 97.6 | Plus |
| Act87E-PB | 376 | CG18290-PB | 1..376 | 1..376 | 1936 | 97.6 | Plus |
| Act87E-PA | 376 | CG18290-PA | 1..376 | 1..376 | 1936 | 97.6 | Plus |
| Act57B-PA | 376 | CG10067-PA | 1..376 | 1..376 | 1933 | 97.3 | Plus |
