BS27588.complete Sequence
2858 bp assembled on 2011-10-14
GenBank Submission: KX806115
> BS27588.complete
GAAGTTATCAGTCGACATGCGTAGTGCTATTTATAATTTCTTCATATACA
TATGTTCCTCGATGGCTAGTGGTACACGAACCCTATTTATACTGACAATA
CTTCTAACTGCGCCTGGATTAGAGGCGTTTGTCAATGACTTTTCTTCACT
TCACGTAATATCAGAGGTTCGCCTGCCTAAGGAAGTTTTGCCTCTAAGCT
ATGAAGTCCTCATTGAACCGCATATGGATAACCAAAACTTTGAAGGATCA
ATAAGAATGCACTTAAGATGGATTGGAGATTCAAAAAAGGTGTATTTCCA
TGCACATGACACTTTGTTGATCGACGTCAGCCAAATCAATTTAACTACAT
TAAATATGGGAGATGGGACGTTGGACAAAAATGTAATAATTTTAAGGGGC
GTCCGACTGCCTCGAAAGCCTGTATTTGTTTTGTACCTAAAAGATAAAAT
AAAAAAGGGCTCGGAATGTCTTTTAGACATTTATTTTCAAGGAAATATTT
CAGAAACTGAGGAAGGCCTTTTTAGAAGCTATTACACCAATTCTGGCAAC
GATGGCGAAGAAATATATTTAGCTACAAACCTTAAACCAAACAATGCACG
CCGATTATTTCCATGCTTTGATGAACCAGGAATAAAGGTCCCATTCAATG
TGTCAATTGCAAGACCTAAAGGTTATATTACACTATTTAATACGCCTCTG
CATAATACAATAAATCATCCTAAATTACGTAGTTACAGCTTGGATTTTTT
TCATACCACTGCGCCAATGTCTACACATGCTTTTGGCTTTGTAATATTAA
AACTGCATATGTGGAACGAACATAAAATTGTAAAATCTTCAGATATTCCT
GCCATAAATATATGGAGCAATAACCTCTCATCAACCAATTTATTGGATAT
CCAAAACAAACTTAATGTTGCACATACTACAATTCAACATTTTTTTAATA
TCCCGCTCCCTTTAACTAAGCTTGATGTTATCGCGATACCTAGTCTTGCA
ACACTTCCATTTATTAGCGCAAGTGGTATTCTGATAGCTAGAGAATCTGA
AATTCTAAAGAAAGATGTATTCGAAATATCGCGGGAACTAATTTATCAAT
GGATTGGTATATGGATAACGCCTGAATGGTGGACTGATGCTAATGTGAAT
AAAGCGCTAATCAGCTTTATTGCATCAGAAATTGTTTTTGAAATAAATGG
TGGAATAGAGTTTAATGGTAAATATCCAATGACAATTCTTTACTCATTGT
ACTATGAGTTAAGCAAGAGGTATCCCAACTCGCACATAACAGGAATTAAA
CACGAGTTTGCGTCAATAAAAGTTCAGCTTATAATTCGAATGCTTAGCCT
TACCGTAGGAAAATACACTTTTAGACTCGGAATACAAAGCTTTATTTGTG
ACTATAAATTTAAAACGTATAAAAGCTCTGACTTCTGGAATGCAATCACG
ACACAAGCCAAAGCAGATAATTCACTAGATAGTGATCTAAGTATATTAAG
CATTGCTGAGTCTTGGTTAGAGCATAGCCGACTACCTCTTGTCACAATAA
TACGAGATTACGATTCAGAAACTGCAATTGTTCAACAAAAGGTATATCTT
AGGGAAAGGCTACATGATGTTCCCGACCAGGACAATATGCTTTGGTGGAT
CCCCATTGCGTTAAAGCGGCAAGACAGTCTAAGTTTTGTGAATACTGGTT
CATTTAAATGGATGAATAAGACAAGGCAAATGCTAATTTCAAATCTTCCA
AGCAAAAATATGTTTATAATTGTTAATGAAGAGGAAATCGGACCCTTCCC
CGTTAACTATGACGACAACAATTGGAACATGCTATCAAAATATCTAAGGA
CGGAAGAAAAAAGAGAATCAATTCCAGTATATACAAGGGCAAAACTACTA
CATGACGCCTGGAACTTAGCTTACGCTGGTGAACTTAATTTTTCCACTGC
TCTTAATGTAACATTATTTTTAAAGTATGAACGTAATCATATTGTTTGGA
GTCCAGTATTCACATTTCTTGACCAAGTTGGCAAACGTCTCGAAAAATCA
TCAATTAATAAAAAGTTTGAGCTTTACATTATAGAACTCTTAGCTCCATT
ATATGAATACTTGGGAACTGCACATTTTAACGAAGACATAAATATAACTG
AACTCCGTAAATTGACTACATCGTTTTTATGTAAAGCAGGATATTTTCCA
TGTTTTAAGGAAGCAAGAAGGGCCTTCAATATATGGATCAACAGTTCTTT
TCCAAACTTTGAAACTCCGGTCCCCAACGAGTACATTTGTTCAATTTTCA
AGTGGGGCTCTATGAAGGAATGGATGTTTGGGCTGGATCGTTTGTGCGAA
TTTCCTAAGTCTCGTATTCAGAGTGATCGTACCCATTTATTAAAAATGCT
AGCTGGATGTCCAGCGCAGCGAGATAAAATTTTTATTCTACTTGAATTGG
CCATTCTGAAAAATATTTCAATTTTTTCCGATACCGACAAAATGTTAATT
ATTAGTACGGTTACTTCTCGATCCATAGGATACACGACACTATTGGATTT
TCTGTCAAATAATTGGGATGATATTCATCATAAGTTTTATAATAACACAA
ATATTTGGACCAAGCTTATTTCATCTGCAACGGGAATGTTTTCTACTCAA
GAAGGTTACGATTTGGTTAAAAAATTTTACGATGAGCATTATGGACATTT
TGGCCGTGCACAACACATAATAGAGAAATCACTTCGAAATATCAAAGAAG
GAATTCAATGGAGTAAGCAAAATATACCCGTAATAGAGGAGTGGATTGAC
CACTATTTGTCTGACGCCCCAAAACTAGCATATGTAAATTAAAAGCTTTC
TAGACCAT
BS27588.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:14:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40470-RA | 2826 | CG40470-PA | 1..2826 | 17..2842 | 14130 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40470-RA | 2990 | CG40470-RA | 103..2928 | 17..2842 | 14130 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 23889104..23889799 | 1888..1193 | 3480 | 100 | Minus |
| 3L | 28110227 | 3L | 23873608..23873924 | 2585..2269 | 1585 | 100 | Minus |
| 3L | 28110227 | 3L | 23934553..23934826 | 639..366 | 1370 | 100 | Minus |
| 3L | 28110227 | 3L | 23839922..23840180 | 2842..2584 | 1295 | 100 | Minus |
| 3L | 28110227 | 3L | 23934879..23935123 | 367..123 | 1225 | 100 | Minus |
| 3L | 28110227 | 3L | 23873991..23874194 | 2269..2066 | 1005 | 99.5 | Minus |
| 3L | 28110227 | 3L | 23874248..23874434 | 2071..1885 | 935 | 100 | Minus |
| 3L | 28110227 | 3L | 23912277..23912455 | 896..718 | 895 | 100 | Minus |
| 3L | 28110227 | 3L | 23889856..23890013 | 1196..1039 | 775 | 99.4 | Minus |
| 3L | 28110227 | 3L | 23890061..23890207 | 1041..895 | 735 | 100 | Minus |
| 3L | 28110227 | 3L | 23934415..23934496 | 717..636 | 410 | 100 | Minus |
| 3L | 28110227 | 3L | 23974597..23974661 | 125..61 | 325 | 100 | Minus |
| 3L | 28110227 | 3L | 23986264..23986308 | 61..17 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:14:29 has no hits.
BS27588.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:17 Download gff for
BS27588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40470-RA | 83..2906 | 17..2840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:55:48 Download gff for
BS27588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40470-RA | 103..2926 | 17..2840 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:14:23 Download gff for
BS27588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG40470-RA | 103..2926 | 17..2840 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:14:23 Download gff for
BS27588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 23974598..23974660 | 62..124 | 100 | <- | Minus |
| 3L | 23986264..23986308 | 17..61 | 100 | | Minus |
| 3L | 23839924..23840180 | 2584..2840 | 100 | <- | Minus |
| 3L | 23873610..23873924 | 2269..2583 | 100 | <- | Minus |
| 3L | 23873992..23874188 | 2072..2268 | 100 | <- | Minus |
| 3L | 23874248..23874431 | 1888..2071 | 100 | <- | Minus |
| 3L | 23889105..23889799 | 1193..1887 | 100 | <- | Minus |
| 3L | 23889860..23890010 | 1042..1192 | 100 | <- | Minus |
| 3L | 23890061..23890206 | 896..1041 | 100 | <- | Minus |
| 3L | 23912278..23912455 | 718..895 | 100 | <- | Minus |
| 3L | 23934415..23934494 | 638..717 | 100 | <- | Minus |
| 3L | 23934555..23934825 | 367..637 | 100 | <- | Minus |
| 3L | 23934880..23935121 | 125..366 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:55:48 Download gff for
BS27588.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 23883161..23883306 | 896..1041 | 100 | <- | Minus |
| arm_3L | 23833024..23833280 | 2584..2840 | 100 | <- | Minus |
| arm_3L | 23866710..23867024 | 2269..2583 | 100 | <- | Minus |
| arm_3L | 23867092..23867288 | 2072..2268 | 100 | <- | Minus |
| arm_3L | 23867348..23867531 | 1888..2071 | 100 | <- | Minus |
| arm_3L | 23882960..23883110 | 1042..1192 | 100 | <- | Minus |
| arm_3L | 23882205..23882899 | 1193..1887 | 100 | <- | Minus |
| arm_3L | 23905378..23905555 | 718..895 | 100 | <- | Minus |
| arm_3L | 23927515..23927594 | 638..717 | 100 | <- | Minus |
| arm_3L | 23927655..23927925 | 367..637 | 100 | <- | Minus |
| arm_3L | 23927980..23928221 | 125..366 | 100 | <- | Minus |
| arm_3L | 23967698..23967760 | 62..124 | 100 | <- | Minus |
| arm_3L | 23979364..23979408 | 17..61 | 100 | | Minus |
BS27588.pep Sequence
Translation from 16 to 2841
> BS27588.pep
MRSAIYNFFIYICSSMASGTRTLFILTILLTAPGLEAFVNDFSSLHVISE
VRLPKEVLPLSYEVLIEPHMDNQNFEGSIRMHLRWIGDSKKVYFHAHDTL
LIDVSQINLTTLNMGDGTLDKNVIILRGVRLPRKPVFVLYLKDKIKKGSE
CLLDIYFQGNISETEEGLFRSYYTNSGNDGEEIYLATNLKPNNARRLFPC
FDEPGIKVPFNVSIARPKGYITLFNTPLHNTINHPKLRSYSLDFFHTTAP
MSTHAFGFVILKLHMWNEHKIVKSSDIPAINIWSNNLSSTNLLDIQNKLN
VAHTTIQHFFNIPLPLTKLDVIAIPSLATLPFISASGILIARESEILKKD
VFEISRELIYQWIGIWITPEWWTDANVNKALISFIASEIVFEINGGIEFN
GKYPMTILYSLYYELSKRYPNSHITGIKHEFASIKVQLIIRMLSLTVGKY
TFRLGIQSFICDYKFKTYKSSDFWNAITTQAKADNSLDSDLSILSIAESW
LEHSRLPLVTIIRDYDSETAIVQQKVYLRERLHDVPDQDNMLWWIPIALK
RQDSLSFVNTGSFKWMNKTRQMLISNLPSKNMFIIVNEEEIGPFPVNYDD
NNWNMLSKYLRTEEKRESIPVYTRAKLLHDAWNLAYAGELNFSTALNVTL
FLKYERNHIVWSPVFTFLDQVGKRLEKSSINKKFELYIIELLAPLYEYLG
TAHFNEDINITELRKLTTSFLCKAGYFPCFKEARRAFNIWINSSFPNFET
PVPNEYICSIFKWGSMKEWMFGLDRLCEFPKSRIQSDRTHLLKMLAGCPA
QRDKIFILLELAILKNISIFSDTDKMLIISTVTSRSIGYTTLLDFLSNNW
DDIHHKFYNNTNIWTKLISSATGMFSTQEGYDLVKKFYDEHYGHFGRAQH
IIEKSLRNIKEGIQWSKQNIPVIEEWIDHYLSDAPKLAYVN*
BS27588.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:27:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG40470-PA | 941 | CG40470-PA | 1..941 | 1..941 | 4956 | 100 | Plus |
| CG14516-PC | 990 | CG14516-PC | 102..986 | 50..929 | 815 | 25.6 | Plus |
| CG14516-PA | 990 | CG14516-PA | 102..986 | 50..929 | 815 | 25.6 | Plus |
| CG14516-PB | 999 | CG14516-PB | 111..995 | 50..929 | 815 | 25.6 | Plus |
| CG31445-PB | 927 | CG31445-PB | 4..927 | 24..931 | 773 | 25.9 | Plus |
