BS27591.complete Sequence
1145 bp assembled on 2011-09-12
GenBank Submission: KX801405
> BS27591.complete
GAAGTTATCAGTCGACATGATTAGCACCACGGATTATCCAACAGTGGAGA
CCACCACAACTGCCGAAGAGCTCTATGCGGAGTACATATCCGCGCCGGCC
AGCAGCATGAGTCCCGCTGCAATTGCCGAGCACCTGCAGCAGAATCAGAT
CACCTTCGAGATACCCAGTGCCCACGATCTGCGACACATCGACGCCCTCA
ACTCCTTCAACGCCCTGCTCCAGAGGATTGGCAACGCAGCGGTGTCCTAC
GATCCCGCTCCACCCAGCGGCTGGTCTCCGGATGGCAGCATCAGCACCGA
GCAGCTCTCCAAGTCGGTGGTTCTGGATCTGGCCGACTTGCGGGATAGGT
CCGAGGAATCGGGCGAATCCTCGTGGTGGAGCCAGATCTTCGGGGATGCC
GACATGCATGTGATCATCAATTATCTGTGGATCGGAGTGGTCAGCTCGCT
GGTCATTCTGTCGCTGGTCTTCATCCTCTTCAGCTGCTACTTCTACAGGA
AGTTCCGCACTTGGAAAAAATGCAATAAGGACATACGTGCCCAGATCCAT
GCGGCCAGTGACTCGTACTCCTCGCACCTGGTTGGTTGCGATGCCAGCAG
ACTGCTGTTGCACCAGCAGATGCAGCATCCACATCATCGGAGCAGCGAGG
CTGGGTTCTACCAAATCGAATCGCCGCCCTGCTACACAATCGCCACCGGA
TTGCCCAGCTACGATGAGGCACTGCATCATCAGCCTCGGCACTTTGCCTA
CGGCATGAAGTTCGTTTATCCCTCGTTGGCGGCCGTGCATCATCATCACC
ATTGCATTTCCAATTGGGAGAAGCAGGAGCCGCTGAATAAGCTGCAAAAG
TGCAAGCTGTCAGCGGCAGCGGCAGTGGAGGAGGATAAAGCCGACTCCTC
ATCGTCCACGTCTGCATCCGCGTCGCCATCCTCTTCGGAATCCAGCAACT
TGGCCACAGCAACGCCTGCCATTTGCATTAACATGCCAAGTGGGCGGCAG
GATGAGGAGGTGGATAATTCAGATTCCGATTCCGCAATTGCAGTTGCAGT
GGCAGTAGCACAAAGTTTACAGCCGGCGGCGCCTGCCGACGATGATTGCG
CCTCATTGGTCGTTGTTGTTGCCGCGTGAAAGCTTTCTAGACCAT
BS27591.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm-RB | 1113 | CG17943-PB | 1..1113 | 17..1129 | 5565 | 100 | Plus |
| comm-RA | 1113 | CG17943-PA | 1..1113 | 17..1129 | 5565 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:00:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm-RB | 2495 | CG17943-RB | 226..1339 | 16..1129 | 5570 | 100 | Plus |
| comm-RA | 1678 | CG17943-RA | 226..1339 | 16..1129 | 5570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 15722667..15723271 | 1129..525 | 3025 | 100 | Minus |
| 3L | 28110227 | 3L | 15727692..15728205 | 529..16 | 2555 | 99.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 07:00:57 has no hits.
BS27591.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:29 Download gff for
BS27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 351..1462 | 17..1128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:25 Download gff for
BS27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 227..1338 | 17..1128 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:00:49 Download gff for
BS27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| comm-RA | 227..1338 | 17..1128 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:00:49 Download gff for
BS27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 15722668..15723271 | 525..1128 | 100 | <- | Minus |
| 3L | 15727697..15728204 | 17..524 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:25 Download gff for
BS27591.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 15715768..15716371 | 525..1128 | 100 | <- | Minus |
| arm_3L | 15720797..15721304 | 17..524 | 100 | | Minus |
BS27591.pep Sequence
Translation from 16 to 1128
> BS27591.pep
MISTTDYPTVETTTTAEELYAEYISAPASSMSPAAIAEHLQQNQITFEIP
SAHDLRHIDALNSFNALLQRIGNAAVSYDPAPPSGWSPDGSISTEQLSKS
VVLDLADLRDRSEESGESSWWSQIFGDADMHVIINYLWIGVVSSLVILSL
VFILFSCYFYRKFRTWKKCNKDIRAQIHAASDSYSSHLVGCDASRLLLHQ
QMQHPHHRSSEAGFYQIESPPCYTIATGLPSYDEALHHQPRHFAYGMKFV
YPSLAAVHHHHHCISNWEKQEPLNKLQKCKLSAAAAVEEDKADSSSSTSA
SASPSSSESSNLATATPAICINMPSGRQDEEVDNSDSDSAIAVAVAVAQS
LQPAAPADDDCASLVVVVAA*
BS27591.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| comm-PB | 370 | CG17943-PB | 1..370 | 1..370 | 1923 | 100 | Plus |
| comm-PA | 370 | CG17943-PA | 1..370 | 1..370 | 1923 | 100 | Plus |
| comm2-PA | 343 | CG7554-PA | 101..300 | 117..364 | 165 | 25.3 | Plus |
