BS27592.complete Sequence
1325 bp assembled on 2011-09-12
GenBank Submission: KX805475
> BS27592.complete
GAAGTTATCAGTCGACATGGTTTCGTTACAGAGTGGAAATCTAAAACTTA
ATAAAGTTGATATTTCTCTGCAAGACTGTCTTGCGTGTTCTGGTTGCATC
ACTTCAGCTGAAGAAGTCCTTATCACGCAGCAGAGCCGAGAAGAGTTGCT
TAAGGTCCTTCAAGAGAATTCAAAGAATAAGGCCTCTGAAGACTGGGATA
ACGTGCGTACGATCGTGTTCACCCTTGCCACCCAGCCTATACTAAGCTTA
GCCTATCGCTATCAGATAGGTGTGGAGGATGCTGCCCGTCATCTTAATGG
GTATTTTCGCAGTTTGGGTGCCGACTATGTTTTGTCCACTAAGGTGGCGG
ACGATATTGCGCTGCTCGAATGTCGTCAAGAATTTGTAGATAGGTACCGC
GAAAATGAGAACTTGACCATGCTTAGCTCCTCTTGTCCGGGGTGGGTTTG
TTACGCGGAGAAAACACACGGAAACTTCTTATTGCCTTACGTTTCCACGA
CCCGATCTCCTCAGCAAATAATGGGAGTGCTTGTGAAGCAAATCCTTGCC
GATAAGATGAATGTTCCTGCGTCACGAATCTACCATGTGACCGTGATGCC
TTGCTACGACAAGAAGCTTGAGGCCTCTCGAGAGGACTTTTTCAGCAAGG
CAAATAACTCACGCGACGTAGACTGTGTAATCACTTCAGTTGAGGTGGAA
CAGTTGCTTAGTGAGGCTCAGCAGCCGCTGTCGCAGTACGATCTCCTTGA
TTTAGACTGGCCATGGTCTAATGTACGCCCAGAATTCATGGTATGGGCTC
ACGAGAAGACGCTATCTGGCGGTTACGCAGAACACATATTTAAGTACGCC
GCAAAACATATTTTCAACGAAGATTTAAAAACAGAGTTGGAATTCAAACA
GCTCAAAAACCGCGACTTTAGAGAAATTATACTTAAACAGAATGGCAAAA
CTGTCCTGAAATTTGCAATTGCTAACGGTTTCCGGAACATACAAAACTTG
GTACAAAAACTGAAGCGTGAAAAGGTATCAAATTACCACTTTGTTGAGGT
AATGGCCTGTCCCTCGGGCTGTATAAACGGAGGAGCACAAATACGTCCCA
CTACCGGACAGCACGTTCGCGAGCTTACCCGGAAACTGGAGGAATTATAC
CAGAATCTTCCACGGTCCGAACCCGAAAACTCCTTAACAAAACATATTTA
CAATGACTTTTTAGACGGCTTTCAAAGTGATAAATCATATGACGTGCTGC
ACACCCGTTACCATGATGTAGTATCTGAGCTCAGTATATCGCTTAATATA
AATTGGTAAAAGCTTTCTAGACCAT
BS27592.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:01:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RD | 1293 | CG17683-PD | 1..1293 | 17..1309 | 6465 | 100 | Plus |
| CG17683-RC | 1422 | CG17683-PC | 143..1422 | 30..1309 | 6400 | 100 | Plus |
| CG17683-RA | 1434 | CG17683-PA | 155..1434 | 30..1309 | 6400 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:01:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-RD | 2403 | CG17683-RD | 283..1576 | 17..1310 | 6470 | 100 | Plus |
| CG17683-RC | 1785 | CG17683-RC | 231..1511 | 30..1310 | 6405 | 100 | Plus |
| CG17683-RA | 1696 | CG17683-RA | 243..1523 | 30..1310 | 6405 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:01:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4131307..4131979 | 17..689 | 3365 | 100 | Plus |
| 2R | 25286936 | 2R | 4132034..4132657 | 687..1310 | 3120 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:01:41 has no hits.
BS27592.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:30 Download gff for
BS27592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 275..1565 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:02:48 Download gff for
BS27592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 283..1573 | 17..1307 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:08 Download gff for
BS27592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17683-RD | 283..1573 | 17..1307 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:08 Download gff for
BS27592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4131307..4131979 | 17..689 | 100 | -> | Plus |
| 2R | 4132037..4132654 | 690..1307 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:02:48 Download gff for
BS27592.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18812..19484 | 17..689 | 100 | -> | Plus |
| arm_2R | 19542..20159 | 690..1307 | 100 | | Plus |
BS27592.pep Sequence
Translation from 16 to 1308
> BS27592.pep
MVSLQSGNLKLNKVDISLQDCLACSGCITSAEEVLITQQSREELLKVLQE
NSKNKASEDWDNVRTIVFTLATQPILSLAYRYQIGVEDAARHLNGYFRSL
GADYVLSTKVADDIALLECRQEFVDRYRENENLTMLSSSCPGWVCYAEKT
HGNFLLPYVSTTRSPQQIMGVLVKQILADKMNVPASRIYHVTVMPCYDKK
LEASREDFFSKANNSRDVDCVITSVEVEQLLSEAQQPLSQYDLLDLDWPW
SNVRPEFMVWAHEKTLSGGYAEHIFKYAAKHIFNEDLKTELEFKQLKNRD
FREIILKQNGKTVLKFAIANGFRNIQNLVQKLKREKVSNYHFVEVMACPS
GCINGGAQIRPTTGQHVRELTRKLEELYQNLPRSEPENSLTKHIYNDFLD
GFQSDKSYDVLHTRYHDVVSELSISLNINW*
BS27592.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17683-PD | 430 | CG17683-PD | 1..430 | 1..430 | 2243 | 100 | Plus |
| CG17683-PC | 473 | CG17683-PC | 48..473 | 5..430 | 2223 | 99.8 | Plus |
| CG17683-PA | 477 | CG17683-PA | 52..477 | 5..430 | 2223 | 99.8 | Plus |
| CG17683-PE | 296 | CG17683-PE | 1..296 | 135..430 | 1567 | 100 | Plus |
