BS27610.complete Sequence
968 bp assembled on 2011-09-12
GenBank Submission: KX803533
> BS27610.complete
GAAGTTATCAGTCGACATGGCCGATAAAAAAATTGGTGAATACTATGCAC
CACCTGTGAAAATGGGCAAATGGGAGGGTTTCAAAAAATTCCTATGGAAC
AGTGAAACTAGCCAATGCCTTGGACGCACCGGATCCAGTTGGGCGAAAAT
TCTCCTATTTTACATAATTTTTTATGCGGCGTTAACTGGTTTTTTTGCTG
CAATTTTCACTGTATTTTATCAAACTTTGGACAATGAAAAGCCAAAATGG
ATGCTTGACAATGGTTTGATAGGGTCCAACCCAGGTCTAGGCTTTCGACC
AATGCCACCGGAAGCGAATGTTGAGAGCACATTAGTTTGGTACGAGTCAT
CAAAGAAGGATAACTATAAGTACTGGGTGGACGAGACTTCACGTTTTCTG
AAATCGTACCAAGATCTTGAGAAGCAAAATCAAGTGAACTGTAGCTTTGA
ACATCCACCACAAGACGACAAGGTCTGCGGCATTGACTTCTCCAGCTTCT
CGCCATGTACAGCTGACAACAACTTTGGCTACCACGTTGCCCGGCCATGT
ATATTCCTTAAGTTGAATAAGATTTACAATTGGATACCAGAAATTTACAA
CGATTCTAAGACTTTGCCAGATCATATGCCAGAGGAACTAAAACAGCACA
TCAAGGAAAAGCAAAGTCTTAGGCCCAATGAAACAAATGTAGTTTGGGTC
TCGTGCGAGGGAGAAAATCCCGCTGATGTAGAGAACATAAAAGCACGCGA
CTACTATCCCCGAATGGGATTTCCTCGTTACTATTTTCCGTTTAAAAACA
TTCAGGGATATATACCGCCCATTGTTGCTGTTCAATTTACCGTTGAAACC
GGCGTTTTGATCAACATTGAATGTAAAGCTTGGGCCCGCAACATTAATCA
CGACCGTTCAGACAGAAGAGGATCCGTTCACTTCGAGTTGATGGTTGATT
AAAAGCTTTCTAGACCAT
BS27610.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:02:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv3-RD | 936 | CG8663-PD | 1..936 | 17..952 | 4665 | 99.9 | Plus |
| nrv3-RC | 936 | CG8663-PC | 1..936 | 17..952 | 4665 | 99.9 | Plus |
| nrv3-RA | 936 | CG8663-PA | 1..936 | 17..952 | 4665 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:02:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv3-RD | 4514 | CG8663-RD | 415..1350 | 17..952 | 4665 | 99.9 | Plus |
| nrv3-RC | 1675 | CG8663-RC | 548..1483 | 17..952 | 4665 | 99.9 | Plus |
| nrv3-RA | 1519 | CG8663-RA | 392..1327 | 17..952 | 4665 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21388503..21388669 | 405..571 | 835 | 100 | Plus |
| 2L | 23513712 | 2L | 21388914..21389079 | 683..848 | 815 | 99.4 | Plus |
| 2L | 23513712 | 2L | 21384454..21384597 | 143..286 | 720 | 100 | Plus |
| 2L | 23513712 | 2L | 21382204..21382330 | 17..143 | 635 | 100 | Plus |
| 2L | 23513712 | 2L | 21385275..21385397 | 282..404 | 615 | 100 | Plus |
| 2L | 23513712 | 2L | 21388730..21388842 | 570..682 | 565 | 100 | Plus |
| 2L | 23513712 | 2L | 21390052..21390155 | 849..952 | 520 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:02:53 has no hits.
BS27610.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:30 Download gff for
BS27610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RD | 741..1674 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:03:23 Download gff for
BS27610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RC | 548..1481 | 17..950 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:01:37 Download gff for
BS27610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| nrv3-RA | 392..1325 | 17..950 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:01:37 Download gff for
BS27610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21388914..21389079 | 683..848 | 99 | -> | Plus |
| 2L | 21390052..21390153 | 849..950 | 100 | | Plus |
| 2L | 21388732..21388842 | 572..682 | 100 | -> | Plus |
| 2L | 21382204..21382330 | 17..143 | 100 | -> | Plus |
| 2L | 21384455..21384595 | 144..284 | 100 | -> | Plus |
| 2L | 21385278..21385397 | 285..404 | 100 | -> | Plus |
| 2L | 21388503..21388669 | 405..571 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:03:23 Download gff for
BS27610.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21382204..21382330 | 17..143 | 100 | -> | Plus |
| arm_2L | 21384455..21384595 | 144..284 | 100 | -> | Plus |
| arm_2L | 21385278..21385397 | 285..404 | 100 | -> | Plus |
| arm_2L | 21388503..21388669 | 405..571 | 100 | -> | Plus |
| arm_2L | 21388732..21388842 | 572..682 | 100 | -> | Plus |
| arm_2L | 21388914..21389079 | 683..848 | 99 | -> | Plus |
| arm_2L | 21390052..21390153 | 849..950 | 100 | | Plus |
BS27610.pep Sequence
Translation from 16 to 951
> BS27610.pep
MADKKIGEYYAPPVKMGKWEGFKKFLWNSETSQCLGRTGSSWAKILLFYI
IFYAALTGFFAAIFTVFYQTLDNEKPKWMLDNGLIGSNPGLGFRPMPPEA
NVESTLVWYESSKKDNYKYWVDETSRFLKSYQDLEKQNQVNCSFEHPPQD
DKVCGIDFSSFSPCTADNNFGYHVARPCIFLKLNKIYNWIPEIYNDSKTL
PDHMPEELKQHIKEKQSLRPNETNVVWVSCEGENPADVENIKARDYYPRM
GFPRYYFPFKNIQGYIPPIVAVQFTVETGVLINIECKAWARNINHDRSDR
RGSVHFELMVD*
BS27610.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:13:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| nrv3-PD | 311 | CG8663-PD | 1..311 | 1..311 | 1716 | 100 | Plus |
| nrv3-PC | 311 | CG8663-PC | 1..311 | 1..311 | 1716 | 100 | Plus |
| nrv3-PA | 311 | CG8663-PA | 1..311 | 1..311 | 1716 | 100 | Plus |
| nrv3-PE | 313 | CG8663-PE | 1..313 | 1..311 | 1700 | 99 | Plus |
| nrv2-PG | 323 | CG9261-PG | 14..323 | 8..311 | 884 | 50.3 | Plus |
