Clone BS27633 Report

Search the DGRC for BS27633

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:276
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptECSIT-RA
Protein status:BS27633.pep: full length peptide match
Sequenced Size:1262

Clone Sequence Records

BS27633.complete Sequence

1262 bp assembled on 2011-09-12

GenBank Submission: KX801731

> BS27633.complete
GAAGTTATCAGTCGACATGCTGCGCCGCGCACAATGCCTGCTCCGGCTGC
ACGGCAATGGAGGCCATTCGCTGGTCAGCCGCTTTCGAAACTACGCTACG
GACGAGGGAAATCCGAAACAGAACCCGAATCCAAATCCCAGGGCACAAAA
ACCCGGCACCAAAAACCTGCCGGCTTTAAGGAACCCCTTTGCCGCCGCCC
AGGACAGGACGAAAAACAGCTACCTGACCATGGTGGAGATATTCCAGGAG
CGCGACGTCCACCGTCGGAACCATGTGGAGTTCATCTACGCGGCACTCAA
GAATATGGCGGATTTCGGGGTGGAAAGAGACTTGGAGGTCTACAAGGCCC
TGATCAACGTGATGCCCAAGGGCAAGTTCATACCCACCAACATGTTCCAG
GCAGAGTTCATGCACTACCCCAAACAGCAGCAGTGTATCATTGATCTGCT
TGAGCAGATGGAAGATTGCGGGGTGATGCCCGATCACGAGATGGAGGCGA
TGCTGCTTAATGTGTTTGGCAGGCAGGGACATCCACTGCGCAAGTATTGG
CGCATGATGTACTGGATGCCAAAGTTTAAGAACCTATCACCGTGGCCACT
GCCCGATCCTGTTCCGGATGATACATTGGAAATGGCCAAGCTGGCGCTAG
AGCGGATGTGCACGGTCGACCTGCGGTCCAAAATCACGGTTTTCGAGACC
AGCGAGCTGAAGGATGCCATTGACGATACGTGGATCGTGAGCGGAATGAG
TCCCGAGCAGGAGAAACTGCTGCGGGAGCACTCTCGCCAGAAAGCTCTGT
ACATCGAGGGACCCTTTCACATATGGCTTAGGAATCGCCGGATCAACTAC
TTTACCCTGCGCGCTGATGCAGATTCTGAGTTCCTGTCTGAATTAGATGA
GCGGCAGCTGGACGAGGACGATGTCTCCCACATCGAAGTACCCTTCTTTG
GTCGTGCTCCACCAAGGCGACACAACCAGCTGGGAAAGCTGCGCTCTGTC
CACCAACAGGACGACGGAACCATTATGGCCATCTGTGCCACAGGCACCTC
CACAAAGGACTCATTGCTCTCGTGGATTCGCCTGTTGGAAGCGAACGGAA
ATCCCTCCATAGGAGAGGTGCCCGTCCTCTTCCGGTTCACATCCGAAGTG
CCAGCCAAGGCGGAGGAAATTGAAGGTGGCGCCAGTGTCCCGGCAACAAG
TGATAACAGTAGTCAAGATGAGCACATTAGCAGTAGACAGAAATAAAAGC
TTTCTAGACCAT

BS27633.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:04:17
Subject Length Description Subject Range Query Range Score Percent Strand
ECSIT-RA 1230 CG10610-PA 1..1230 17..1246 6150 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:04:19
Subject Length Description Subject Range Query Range Score Percent Strand
ECSIT-RA 1330 CG10610-RA 87..1317 17..1247 6155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:04:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 5856671..5857901 17..1247 6155 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:04:16 has no hits.

BS27633.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:31 Download gff for BS27633.complete
Subject Subject Range Query Range Percent Splice Strand
ECSIT-RA 87..1308 17..1238 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:07 Download gff for BS27633.complete
Subject Subject Range Query Range Percent Splice Strand
ECSIT-RA 87..1308 17..1238 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:13 Download gff for BS27633.complete
Subject Subject Range Query Range Percent Splice Strand
ECSIT-RA 87..1308 17..1238 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:13 Download gff for BS27633.complete
Subject Subject Range Query Range Percent Splice Strand
3R 5856671..5857892 17..1238 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:07 Download gff for BS27633.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 1682393..1683614 17..1238 100   Plus

BS27633.pep Sequence

Translation from 16 to 1245

> BS27633.pep
MLRRAQCLLRLHGNGGHSLVSRFRNYATDEGNPKQNPNPNPRAQKPGTKN
LPALRNPFAAAQDRTKNSYLTMVEIFQERDVHRRNHVEFIYAALKNMADF
GVERDLEVYKALINVMPKGKFIPTNMFQAEFMHYPKQQQCIIDLLEQMED
CGVMPDHEMEAMLLNVFGRQGHPLRKYWRMMYWMPKFKNLSPWPLPDPVP
DDTLEMAKLALERMCTVDLRSKITVFETSELKDAIDDTWIVSGMSPEQEK
LLREHSRQKALYIEGPFHIWLRNRRINYFTLRADADSEFLSELDERQLDE
DDVSHIEVPFFGRAPPRRHNQLGKLRSVHQQDDGTIMAICATGTSTKDSL
LSWIRLLEANGNPSIGEVPVLFRFTSEVPAKAEEIEGGASVPATSDNSSQ
DEHISSRQK*

BS27633.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:00
Subject Length Description Subject Range Query Range Score Percent Strand
ECSIT-PA 409 CG10610-PA 1..409 1..409 2169 100 Plus