Clone BS27644 Report

Search the DGRC for BS27644

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:276
Well:44
Vector:pDNR-Dual
Associated Gene/TranscriptCG10467-RA
Protein status:BS27644.pep: full length peptide match
Sequenced Size:1127

Clone Sequence Records

BS27644.complete Sequence

1127 bp assembled on 2011-09-12

GenBank Submission: KX802155

> BS27644.complete
GAAGTTATCAGTCGACATGGTCAACGTCACGGAAGACGTCTTCGCCAACG
GAGCGGTGAATCCGTTCACCAAGTCAAAGGACACCATCAAGCGGTTCACC
CTGACAAATGGAGCTGGAATGTCCGTGCAATTGATCACCCGTGGAGCCAC
CATTACCAGCATAAAGACGCCTGATGCCAGCGGTCAAATAGATGACGTGA
CCCTCGGATTTGACGATTTGGCGGGCTATCAGAGCGAGAGAAATCCGTAT
TTTGGAGCAACCATTGGGCGGGTTTGCAACCGGATTGCCAATGGCAGCTT
TTATCTTGATGGAAAGCTAGTTCAGGTGTCTAAGAACCGAGACAACAAGT
TTCAGCTCCATGGCGGCTTTGTAGGCTTCGATAAGGCTCACTGGGAAGTT
GTGGAAGTGCGTGTGGATGGTGTTACCCTGTCCCACACCAATCCCGATGG
ACACGAAGGCTATCCCGGCAAGGTGACAGCCACGGCAAGCTTTACCCTCA
GCGAGGATAACTGCCTCCATGTCCAGATGAGTGCACTAGCAGATAAAACC
ACTCCCGTGAATCTCACCAACCACTCCTATTTCAACCTAGCTGGCCACAA
ATCTGGAGCCAACGGTCTCTACGAGCACACCATCGAGATAAATGCTTATG
GAATCACTGAGACGGATCAGTCTTCCATTCCCACCGGCCGTATCACACCC
GTAGAGGGAACAGGATTTGATTTACGTGTGTCCAGCAATCTGGGTGAACG
CCTCAAGGCGCTGCAGCCAGCTCGCGGCTACGATGACAACTTCTGTGTGA
CCTTCAGTCCACCACAACCATTGGCCAAGGTGGCCAGAGCCACTCATCCG
CCCAGCGGACGCTGGCTGGAGGTGGTCAGCAATCAGCCCGGAGTGCAGTT
CTACACCTCCAACTTTATGCCAGACGTGGAACGCGGTGAATCGCCCATTC
CCGGCAAGGATGGAGCTGCCTATGCCAAGCATTGTGCCTTCTGCCTGGAG
ACACAAAAGTTTCCCGACTCCGTGAACCACAGCAACTTTCCCTCGACCAT
TTTGCGACCTGGCGAAAGTTACCAGCACGAAGTCATCTACAAGTTCGGAG
TTTCTCACTGAAAGCTTTCTAGACCAT

BS27644.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:05:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG10467-RA 1095 CG10467-PA 1..1095 17..1111 5475 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10467-RA 1544 CG10467-RA 353..1447 17..1111 5475 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:05:02
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6093301..6094395 1111..17 5475 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:05:03 has no hits.

BS27644.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-12 10:53:32 Download gff for BS27644.complete
Subject Subject Range Query Range Percent Splice Strand
CG10467-RA 342..1435 17..1110 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:04:35 Download gff for BS27644.complete
Subject Subject Range Query Range Percent Splice Strand
CG10467-RA 353..1446 17..1110 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:02:33 Download gff for BS27644.complete
Subject Subject Range Query Range Percent Splice Strand
CG10467-RA 353..1446 17..1110 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:02:33 Download gff for BS27644.complete
Subject Subject Range Query Range Percent Splice Strand
3L 6093302..6094395 17..1110 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:04:35 Download gff for BS27644.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6086402..6087495 17..1110 100   Minus

BS27644.pep Sequence

Translation from 16 to 1110

> BS27644.pep
MVNVTEDVFANGAVNPFTKSKDTIKRFTLTNGAGMSVQLITRGATITSIK
TPDASGQIDDVTLGFDDLAGYQSERNPYFGATIGRVCNRIANGSFYLDGK
LVQVSKNRDNKFQLHGGFVGFDKAHWEVVEVRVDGVTLSHTNPDGHEGYP
GKVTATASFTLSEDNCLHVQMSALADKTTPVNLTNHSYFNLAGHKSGANG
LYEHTIEINAYGITETDQSSIPTGRITPVEGTGFDLRVSSNLGERLKALQ
PARGYDDNFCVTFSPPQPLAKVARATHPPSGRWLEVVSNQPGVQFYTSNF
MPDVERGESPIPGKDGAAYAKHCAFCLETQKFPDSVNHSNFPSTILRPGE
SYQHEVIYKFGVSH*

BS27644.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:14:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG10467-PA 364 CG10467-PA 1..364 1..364 1936 100 Plus
CG32445-PA 367 CG32445-PA 1..361 1..361 943 49.3 Plus
CG32444-PA 370 CG32444-PA 3..358 2..362 886 48.1 Plus
CG4988-PA 368 CG4988-PA 13..358 13..362 864 47.9 Plus
CG10996-PA 392 CG10996-PA 1..365 1..362 837 46.2 Plus