BS27693.complete Sequence
845 bp assembled on 2012-04-25
GenBank Submission: KX802727
> BS27693.complete
GAAGTTATCAGTCGACATGTCCATACAATTAGCGCCACTGCATATACCCG
CCATCCGGGCCGGTCCGGGATTCGAGACGGACACCTCGGCGGCGGTCAAG
CGGCACACGGCACACTGGGCCTACAACGACGAGGGATTCAATCAGCATTA
CGGCTCCGGGTACTACGACCGCAAGCACATGTTCGCCTATCCTTACCCAG
AAACGCAGTTTCCGGTTGGTCAGTACTGGGGCCCCAACTACCGCCCCGAT
CAGACCACCTCTGCCGCAGCGGCGGCGGCCTACATGAACGAAGCGGAGCG
CCACGTGAGCGCCGCCGCCCGACAGTCCGTCGAGGGCACATCGACGTCCA
GCTATGAGCCGCCCACCTACTCCTCGCCAGGCGGCCTGCGCGGCTATCCC
AGCGAGAACTACTCCAGCTCAGGAGCCTCTGGTGGATTATCCGTGGGAGC
AGTGGGTCCTTGCACGCCCAATCCCGGACTGCACGAGTGGACCGGTCAGG
TGTCCGTCCGGAAAAAGCGCAAGCCGTACTCGAAGTTCCAGACCCTGGAG
CTGGAGAAGGAGTTTCTTTTCAATGCGTATGTTTCCAAGCAAAAGCGCTG
GGAATTGGCCAGAAATTTGCAGCTGACCGAGCGACAGGTCAAGATATGGT
TCCAGAATCGGCGCATGAAGAACAAGAAGAACTCACAGCGCCAGGCCAAT
CAGCAGAACAACAACAACAATTCGAGCAGCAACCACAACCACGCGCAGGC
GACCCAGCAGCACCACAGCGGCCACCACCTGAACCTTAGCCTGAACATGG
GTCACCATGCCGCCAAGATGCACCAGTGAAAGCTTTCTAGACCAT
BS27693.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-RG | 861 | CG11648-PG | 1..813 | 17..829 | 4065 | 100 | Plus |
| Abd-B-RF | 861 | CG11648-PF | 1..813 | 17..829 | 4065 | 100 | Plus |
| Abd-B-RE | 813 | CG11648-PE | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:00:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-RG | 2537 | CG11648-RG | 9..821 | 17..829 | 4065 | 100 | Plus |
| Abd-B-RF | 2537 | CG11648-RF | 9..821 | 17..829 | 4065 | 100 | Plus |
| Abd-B-RE | 3703 | CG11648-RE | 712..1524 | 17..829 | 4065 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:00:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16929636..16929856 | 639..419 | 1105 | 100 | Minus |
| 3R | 32079331 | 3R | 16931402..16931605 | 220..17 | 1020 | 100 | Minus |
| 3R | 32079331 | 3R | 16931115..16931317 | 423..221 | 1015 | 100 | Minus |
| 3R | 32079331 | 3R | 16929389..16929583 | 829..635 | 975 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 12:00:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2361..2502 | 653..790 | 159 | 61.8 | Plus |
BS27693.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:07 Download gff for
BS27693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RD | 722..1533 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:08 Download gff for
BS27693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RB | 2215..3026 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:55:27 Download gff for
BS27693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Abd-B-RE | 712..1523 | 17..828 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:55:27 Download gff for
BS27693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16929390..16929580 | 638..828 | 100 | <- | Minus |
| 3R | 16929638..16929852 | 423..637 | 100 | <- | Minus |
| 3R | 16931116..16931317 | 221..422 | 100 | <- | Minus |
| 3R | 16931402..16931605 | 17..220 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:08 Download gff for
BS27693.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12756838..12757039 | 221..422 | 100 | <- | Minus |
| arm_3R | 12755112..12755302 | 638..828 | 100 | <- | Minus |
| arm_3R | 12755360..12755574 | 423..637 | 100 | <- | Minus |
| arm_3R | 12757124..12757327 | 17..220 | 100 | | Minus |
BS27693.pep Sequence
Translation from 16 to 828
> BS27693.pep
MSIQLAPLHIPAIRAGPGFETDTSAAVKRHTAHWAYNDEGFNQHYGSGYY
DRKHMFAYPYPETQFPVGQYWGPNYRPDQTTSAAAAAAYMNEAERHVSAA
ARQSVEGTSTSSYEPPTYSSPGGLRGYPSENYSSSGASGGLSVGAVGPCT
PNPGLHEWTGQVSVRKKRKPYSKFQTLELEKEFLFNAYVSKQKRWELARN
LQLTERQVKIWFQNRRMKNKKNSQRQANQQNNNNNSSSNHNHAQATQQHH
SGHHLNLSLNMGHHAAKMHQ*
BS27693.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Abd-B-PE | 270 | CG11648-PE | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PD | 270 | CG11648-PD | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PA | 270 | CG11648-PA | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PC | 270 | CG11648-PC | 1..270 | 1..270 | 1466 | 100 | Plus |
| Abd-B-PG | 286 | CG11648-PG | 1..270 | 1..270 | 1466 | 100 | Plus |
