BS27701.complete Sequence
1331 bp assembled on 2011-09-27
GenBank Submission: KX802498
> BS27701.complete
GAAGTTATCAGTCGACATGGCCCGCATCACCAGTATTCTGGACTTGGACC
CCAGTTCTCTGTTGTTCATCTTCAAGCTTCTAAGCTTGGAGGACCAGTTG
CACTTGGCGCGATGCTGTCGCATTTTTAGGGATGCCTTTCTTCGCCTGCA
TCGCCATGATTTCCAGGATGTTGTTGACAAGGATATGAGTATAAGGACTC
TGGAGGATTGGCGCACCTTTCTGTGGCTCTGTGGCAGTCGCATCGGTACA
CTGGAATCCCACTTTGACGATGATCACCCGCTGCAGCTGCTCCCGATGAT
CAGCAGACACTGCTACCGACTGAAGTCCATCTCTATATACAATGCAACAG
TGGCACGGGCGCAACCGTATTTATTGAGGATGAGCTCCCTGGAAAAGGTG
CACGTGCGTAACTACAAGAGCACCAGCAAGGATCTAATAAAAGCCATTGG
GATACACCTTCCGCGGGTCAACAGTCTGAGCCTGGAGAGCTTTGAACGCA
AGGAGTTACAAGAAGTACGTCAGTTTAGCGAGATGCTGGAACTTGGCTTG
TACGACGACGTGACCGCCTCGGAATTCGCAACAATTGTGAAACCCATGAG
GAAGCTGCGATGCCTTCAGCTGCGCAACGCCAAACGCTTTCTGACTACCA
GCAATCTCAGGATGCTGGCCACCAACTGCCGCCACCTGGAGAAGCTGACG
TTCAATGACTGCGACGCCGATCTGTTGGTCCTGCCGCAGTTTGTAAACCT
CAAGTACCTGCAATTATACTGCTCGGAGGATATGAAAACGCGCCTGTTCA
AGGCACTGGCCAAAAGCCAGTGCTCCATTCAGTTGGAATACCTCATCCTG
CACCGCAAACGCTGGATTGACGAGGAGCAGGCGCAGTACATCAGTGCTTT
GAAGTGTCTCCGGTGGCTGGTCTGCAAGCCTCGTGACGATCTGTGTGTTC
ACCACTTGGCGAAGTTGAGTCGATTAGAGTGCCTTTCCATACAGTCCGCT
CGTGAGATTGGAGAAACGCAGCTCTCCCTTTTGGTGGCCAACAATGAGCG
CCTTCGGTATTTGAACATTTGCTATTGCCTGGGCATCACAGACGCCTTCG
TCTTGGACACGCTGGCCAGCTTATCGAAACGCTCAGCTCATCAAACCCTA
GAGCTATTTGCCGCGGCCACTGACATTAGGCATGACATCATGGAACGGCT
ACCGCACGAATTTCCCCTGAAAATGCTCTGTTTGAACTTCGAGTGCAGCG
ATGGAATGACAAGCGGCGGACACTTTTATGCCGATGAGCCGGAATTCGAT
CGCCAAGCCTTGTGAAAGCTTTCTAGACCAT
BS27701.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32221-RB | 1299 | CG32221-PB | 1..1299 | 17..1315 | 6480 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32221-RB | 1606 | CG32221-RB | 132..1430 | 17..1315 | 6480 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19835354..19836045 | 507..1198 | 3445 | 99.9 | Plus |
| 3L | 28110227 | 3L | 19834801..19835290 | 17..506 | 2450 | 100 | Plus |
| 3L | 28110227 | 3L | 19836120..19836237 | 1198..1315 | 590 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:17:04 has no hits.
BS27701.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 18:42:45 Download gff for
BS27701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 112..1409 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:45 Download gff for
BS27701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 132..1429 | 17..1314 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:17:47 Download gff for
BS27701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32221-RB | 132..1429 | 17..1314 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:17:47 Download gff for
BS27701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19834801..19835290 | 17..506 | 100 | -> | Plus |
| 3L | 19835354..19836045 | 507..1198 | 99 | -> | Plus |
| 3L | 19836121..19836236 | 1199..1314 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:45 Download gff for
BS27701.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19827901..19828390 | 17..506 | 100 | -> | Plus |
| arm_3L | 19828454..19829145 | 507..1198 | 99 | -> | Plus |
| arm_3L | 19829221..19829336 | 1199..1314 | 100 | | Plus |
BS27701.pep Sequence
Translation from 16 to 1314
> BS27701.pep
MARITSILDLDPSSLLFIFKLLSLEDQLHLARCCRIFRDAFLRLHRHDFQ
DVVDKDMSIRTLEDWRTFLWLCGSRIGTLESHFDDDHPLQLLPMISRHCY
RLKSISIYNATVARAQPYLLRMSSLEKVHVRNYKSTSKDLIKAIGIHLPR
VNSLSLESFERKELQEVRQFSEMLELGLYDDVTASEFATIVKPMRKLRCL
QLRNAKRFLTTSNLRMLATNCRHLEKLTFNDCDADLLVLPQFVNLKYLQL
YCSEDMKTRLFKALAKSQCSIQLEYLILHRKRWIDEEQAQYISALKCLRW
LVCKPRDDLCVHHLAKLSRLECLSIQSAREIGETQLSLLVANNERLRYLN
ICYCLGITDAFVLDTLASLSKRSAHQTLELFAAATDIRHDIMERLPHEFP
LKMLCLNFECSDGMTSGGHFYADEPEFDRQAL*
BS27701.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32221-PB | 432 | CG32221-PB | 1..432 | 1..432 | 2245 | 100 | Plus |
| CG14102-PA | 441 | CG14102-PA | 27..361 | 8..351 | 213 | 25 | Plus |
