Clone BS27702 Report

Search the DGRC for BS27702

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptCG42808-RA
Protein status:BS27702.pep: full length peptide match
Sequenced Size:440

Clone Sequence Records

BS27702.complete Sequence

440 bp assembled on 2011-09-22

GenBank Submission: KX800601

> BS27702.complete
GAAGTTATCAGTCGACATGCCGCTGCGCAAGAAAGAGGACTACATACCCA
TTAAGTGCGAGGGCTGGAACGGCAAGTTCGTGTATCCGGATGGAGCTGTC
AATAATGTGTCCAAGATACGTCGCCAGAACCAGAACGTAACCAATACCAA
CAACTTCTACGGATTCAACACGGAACCCATTGTCCTGCCCACCGAATGGG
ATGGCACCTTCGTGAAGAGTGGCGAGACCCGCATCAAACAGGAGCGCAAT
CGATCCGATGACCAGGACTACTTTGATTACAACACCGAGCCCACGGTACT
GCCCACCACTTGGAGTGGCGAGTTCGTCAACGATCCCAACGATGTGCGCA
TTAAGCCGGAACGCAACTTCTCGGATGCCAGGGATTATGCAGAGGCATCC
CGATTCAAACTGGTCCAGCACTGAAAGCTTTCTAGACCAT

BS27702.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:19:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG42808-RA 408 CG42808-PA 1..408 17..424 2040 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:19:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG42808-RA 640 CG13335-RA 76..483 17..424 2040 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:19:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13573775..13574182 424..17 2040 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:19:49 has no hits.

BS27702.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:57 Download gff for BS27702.complete
Subject Subject Range Query Range Percent Splice Strand
CG42808-RA 61..467 17..423 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:33 Download gff for BS27702.complete
Subject Subject Range Query Range Percent Splice Strand
CG42808-RA 76..482 17..423 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:16:02 Download gff for BS27702.complete
Subject Subject Range Query Range Percent Splice Strand
CG42808-RA 76..482 17..423 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:16:02 Download gff for BS27702.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13573776..13574182 17..423 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:33 Download gff for BS27702.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9461281..9461687 17..423 100   Minus

BS27702.pep Sequence

Translation from 16 to 423

> BS27702.pep
MPLRKKEDYIPIKCEGWNGKFVYPDGAVNNVSKIRRQNQNVTNTNNFYGF
NTEPIVLPTEWDGTFVKSGETRIKQERNRSDDQDYFDYNTEPTVLPTTWS
GEFVNDPNDVRIKPERNFSDARDYAEASRFKLVQH*

BS27702.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG42808-PA 135 CG13335-PA 1..135 1..135 740 100 Plus