BS27706.complete Sequence
695 bp assembled on 2012-04-25
GenBank Submission: KX801609
> BS27706.complete
GAAGTTATCAGTCGACATGGCGTGCCAAAACCAAAATGCCGCCAACTTCT
TGAGCAATGGCAAGAAAATTGTGGGGGTGGCTCTTAATTACATGGACGTT
GTGCTGGCCAGGAACGTTCCCGTGCCCAAGGAGCCGCTCGTCTTCCTCAA
GCCCACATCTTCGTACCTCCAGGAGGGTCAGCCCATTGTGTTACCAAAAG
TCTTTACCAAGGTGGCATATGAAGTGGAACTAGGCGTGGTGATTGGAAAG
CCCTGCAAGAACGTATCCAAGGCAGATGCCATGAGCTATGTGGCAGGATA
CTGCCTGGCTTTGGATCTAACTGCCCAGTGCAATTTGGGACCAGCTCGGG
CGGCCGGTCATCCGTGGACCTTGGGCAAGGGATTTGATACTTCTACGCCC
GTGTCCCAGTTTATACCCATCGAAAAAGTGACGGACCCGCACAACTTGCC
GCTTTGGCTCACCGTCAATGGAGACCTTAAGCAAAACGGGTGCACTGCAG
ACTTAATATTCAAGGTGCCCGACATCATTTCCTACGTGTCCAAGTACATG
ACCCTGGAGGCCAACGATCTGATCCTTACCGGAACGCCCAATGGTGCCGA
TGCGTTCAAGGCAGGCGATGTAATTCAGTGTGGAATGGCCGATCTCGCTA
AATTGACCTTCCAAGTGGAGGCTGAATAAAAGCTTTCTAGACCAT
BS27706.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 12:08:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5793-RB | 663 | CG5793-PB | 1..663 | 17..679 | 3300 | 99.8 | Plus |
| CG5793-RE | 663 | CG5793-PE | 1..663 | 17..679 | 3300 | 99.8 | Plus |
| CG5793-RD | 663 | CG5793-PD | 1..663 | 17..679 | 3300 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:08:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5793-RB | 731 | CG5793-RB | 56..721 | 17..682 | 3315 | 99.8 | Plus |
| CG5793-RE | 1601 | CG5793-RE | 231..896 | 17..682 | 3315 | 99.8 | Plus |
| CG5793-RD | 788 | CG5793-RD | 113..778 | 17..682 | 3315 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 12:08:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21128551..21128896 | 337..682 | 1730 | 100 | Plus |
| 3R | 32079331 | 3R | 21128346..21128494 | 190..338 | 745 | 100 | Plus |
| 3R | 32079331 | 3R | 21128121..21128217 | 94..190 | 485 | 100 | Plus |
| 3R | 32079331 | 3R | 21127978..21128055 | 17..94 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 12:08:11 has no hits.
BS27706.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:22 Download gff for
BS27706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RB | 56..716 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:41 Download gff for
BS27706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RD | 113..773 | 17..677 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:57:55 Download gff for
BS27706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5793-RD | 113..773 | 17..677 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:57:55 Download gff for
BS27706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21127978..21128054 | 17..93 | 98 | -> | Plus |
| 3R | 21128121..21128217 | 94..190 | 100 | -> | Plus |
| 3R | 21128347..21128493 | 191..337 | 100 | -> | Plus |
| 3R | 21128552..21128891 | 338..677 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:41 Download gff for
BS27706.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16953700..16953776 | 17..93 | 98 | -> | Plus |
| arm_3R | 16953843..16953939 | 94..190 | 100 | -> | Plus |
| arm_3R | 16954069..16954215 | 191..337 | 100 | -> | Plus |
| arm_3R | 16954274..16954613 | 338..677 | 100 | | Plus |
BS27706.pep Sequence
Translation from 16 to 678
> BS27706.pep
MACQNQNAANFLSNGKKIVGVALNYMDVVLARNVPVPKEPLVFLKPTSSY
LQEGQPIVLPKVFTKVAYEVELGVVIGKPCKNVSKADAMSYVAGYCLALD
LTAQCNLGPARAAGHPWTLGKGFDTSTPVSQFIPIEKVTDPHNLPLWLTV
NGDLKQNGCTADLIFKVPDIISYVSKYMTLEANDLILTGTPNGADAFKAG
DVIQCGMADLAKLTFQVEAE*
BS27706.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:22:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5793-PB | 220 | CG5793-PB | 1..220 | 1..220 | 1149 | 100 | Plus |
| CG5793-PE | 220 | CG5793-PE | 1..220 | 1..220 | 1149 | 100 | Plus |
| CG5793-PD | 220 | CG5793-PD | 1..220 | 1..220 | 1149 | 100 | Plus |
| CG6028-PA | 293 | CG6028-PA | 79..292 | 12..219 | 309 | 36.6 | Plus |
| CG11251-PA | 338 | CG11251-PA | 128..333 | 12..217 | 249 | 31.3 | Plus |
