Clone BS27714 Report

Search the DGRC for BS27714

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:14
Vector:pDNR-Dual
Associated Gene/TranscriptCG10140-RB
Protein status:BS27714.pep: full length peptide match
Sequenced Size:584

Clone Sequence Records

BS27714.complete Sequence

584 bp assembled on 2011-09-22

GenBank Submission: KX805231

> BS27714.complete
GAAGTTATCAGTCGACATGAGTTCAATGCAAATACCCAAAGCTGTGTACA
TCCTGGTGACGCTGATTGTCTGCCCACCTGCGAGGCTTTCAATTTCAGCA
CCTTCAGTTACCAGAGAACCTGTACGAGATCGCTGTGATTTCCCCCAAAA
TGTCGATTGCGTGGAGTCCGAGTGCTCCATCTACTCCAATGCGTATCATT
TGCGCTATGTTCCCAGCAAGGTTTCCTGCCAGAAGTACTTCATCTGCGGC
AACGGAATTCCCAGGGAGCAAACCTGCACTGCTGGCCTCCACTTTAGTAC
CAAATGCGATTGCTGCGATATTCCATCTAAGTCGGACTGTCAGATCCCAG
CAGTGGAAAGAAAAGTGCAGCAACTTTCACGACTTTCACCCGTTACTACT
GTAGGAATCTGCCCCCCATCCGGGGTCCATTTCTATGTCCATGAGTCTCG
ACGAGATGCCTATTACTATTGCGTGGATGGACATGGTCTGGTTCTGGATT
GTTCGGCGGGTCTTTGGTACGACCCCACGGTTCAGGAGTGTCGTGAACCC
CAGAATGTGGGCATGTAAAAGCTTTCTAGACCAT

BS27714.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10140-RA 894 CG10140-PA 453..894 127..568 2210 100 Plus
CG10140-RA 894 CG10140-PA 269..380 17..128 560 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10140-RA 969 CG10140-RA 488..929 127..568 2210 100 Plus
CG10140-RA 969 CG10140-RA 304..415 17..128 560 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 13439357..13439583 568..342 1135 100 Minus
3L 28110227 3L 13439644..13439860 343..127 1085 100 Minus
3L 28110227 3L 13439933..13440044 128..17 560 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:24:47 has no hits.

BS27714.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:01 Download gff for BS27714.complete
Subject Subject Range Query Range Percent Splice Strand
CG10140-RB 318..867 17..566 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:29 Download gff for BS27714.complete
Subject Subject Range Query Range Percent Splice Strand
CG10140-RB 318..867 17..566 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:04 Download gff for BS27714.complete
Subject Subject Range Query Range Percent Splice Strand
CG10140-RA 304..415 17..128 100 -> Plus
CG10140-RA 490..927 129..566 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:04 Download gff for BS27714.complete
Subject Subject Range Query Range Percent Splice Strand
3L 13439933..13440044 17..128 100   Minus
3L 13439359..13439581 344..566 100 <- Minus
3L 13439644..13439858 129..343 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:29 Download gff for BS27714.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 13432459..13432681 344..566 100 <- Minus
arm_3L 13432744..13432958 129..343 100 <- Minus
arm_3L 13433033..13433144 17..128 100   Minus

BS27714.pep Sequence

Translation from 16 to 567

> BS27714.pep
MSSMQIPKAVYILVTLIVCPPARLSISAPSVTREPVRDRCDFPQNVDCVE
SECSIYSNAYHLRYVPSKVSCQKYFICGNGIPREQTCTAGLHFSTKCDCC
DIPSKSDCQIPAVERKVQQLSRLSPVTTVGICPPSGVHFYVHESRRDAYY
YCVDGHGLVLDCSAGLWYDPTVQECREPQNVGM*

BS27714.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG10140-PA 297 CG10140-PA 152..297 38..183 827 100 Plus
CG10154-PB 316 CG10154-PB 171..316 38..183 414 49.7 Plus
CG10154-PA 316 CG10154-PA 171..316 38..183 414 49.7 Plus
CG10725-PB 269 CG10725-PB 124..268 38..182 393 44.8 Plus
CG33986-PB 277 CG33986-PB 141..259 64..176 168 31.1 Plus
CG10725-PB 269 CG10725-PB 96..192 70..181 159 31.2 Plus