BS27714.complete Sequence
584 bp assembled on 2011-09-22
GenBank Submission: KX805231
> BS27714.complete
GAAGTTATCAGTCGACATGAGTTCAATGCAAATACCCAAAGCTGTGTACA
TCCTGGTGACGCTGATTGTCTGCCCACCTGCGAGGCTTTCAATTTCAGCA
CCTTCAGTTACCAGAGAACCTGTACGAGATCGCTGTGATTTCCCCCAAAA
TGTCGATTGCGTGGAGTCCGAGTGCTCCATCTACTCCAATGCGTATCATT
TGCGCTATGTTCCCAGCAAGGTTTCCTGCCAGAAGTACTTCATCTGCGGC
AACGGAATTCCCAGGGAGCAAACCTGCACTGCTGGCCTCCACTTTAGTAC
CAAATGCGATTGCTGCGATATTCCATCTAAGTCGGACTGTCAGATCCCAG
CAGTGGAAAGAAAAGTGCAGCAACTTTCACGACTTTCACCCGTTACTACT
GTAGGAATCTGCCCCCCATCCGGGGTCCATTTCTATGTCCATGAGTCTCG
ACGAGATGCCTATTACTATTGCGTGGATGGACATGGTCTGGTTCTGGATT
GTTCGGCGGGTCTTTGGTACGACCCCACGGTTCAGGAGTGTCGTGAACCC
CAGAATGTGGGCATGTAAAAGCTTTCTAGACCAT
BS27714.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10140-RA | 894 | CG10140-PA | 453..894 | 127..568 | 2210 | 100 | Plus |
CG10140-RA | 894 | CG10140-PA | 269..380 | 17..128 | 560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:24:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10140-RA | 969 | CG10140-RA | 488..929 | 127..568 | 2210 | 100 | Plus |
CG10140-RA | 969 | CG10140-RA | 304..415 | 17..128 | 560 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:24:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 13439357..13439583 | 568..342 | 1135 | 100 | Minus |
3L | 28110227 | 3L | 13439644..13439860 | 343..127 | 1085 | 100 | Minus |
3L | 28110227 | 3L | 13439933..13440044 | 128..17 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:24:47 has no hits.
BS27714.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:01 Download gff for
BS27714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10140-RB | 318..867 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:29 Download gff for
BS27714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10140-RB | 318..867 | 17..566 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:04 Download gff for
BS27714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10140-RA | 304..415 | 17..128 | 100 | -> | Plus |
CG10140-RA | 490..927 | 129..566 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:04 Download gff for
BS27714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 13439933..13440044 | 17..128 | 100 | | Minus |
3L | 13439359..13439581 | 344..566 | 100 | <- | Minus |
3L | 13439644..13439858 | 129..343 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:29 Download gff for
BS27714.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 13432459..13432681 | 344..566 | 100 | <- | Minus |
arm_3L | 13432744..13432958 | 129..343 | 100 | <- | Minus |
arm_3L | 13433033..13433144 | 17..128 | 100 | | Minus |
BS27714.pep Sequence
Translation from 16 to 567
> BS27714.pep
MSSMQIPKAVYILVTLIVCPPARLSISAPSVTREPVRDRCDFPQNVDCVE
SECSIYSNAYHLRYVPSKVSCQKYFICGNGIPREQTCTAGLHFSTKCDCC
DIPSKSDCQIPAVERKVQQLSRLSPVTTVGICPPSGVHFYVHESRRDAYY
YCVDGHGLVLDCSAGLWYDPTVQECREPQNVGM*
BS27714.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10140-PA | 297 | CG10140-PA | 152..297 | 38..183 | 827 | 100 | Plus |
CG10154-PB | 316 | CG10154-PB | 171..316 | 38..183 | 414 | 49.7 | Plus |
CG10154-PA | 316 | CG10154-PA | 171..316 | 38..183 | 414 | 49.7 | Plus |
CG10725-PB | 269 | CG10725-PB | 124..268 | 38..182 | 393 | 44.8 | Plus |
CG33986-PB | 277 | CG33986-PB | 141..259 | 64..176 | 168 | 31.1 | Plus |
CG10725-PB | 269 | CG10725-PB | 96..192 | 70..181 | 159 | 31.2 | Plus |