BS27715.complete Sequence
689 bp assembled on 2011-09-22
GenBank Submission: KX800736
> BS27715.complete
GAAGTTATCAGTCGACATGGATATAAAAGTATGGCGACTCCTTGGCCAGA
GCTGCAGAAGGAGTACAGCGCTGGTCAGGCACAGATCGAGCAGGATGCCG
TGGTTGCCCATTTCCATTATGGCAATGGCGCTGCTTAGCCTGACAAATAA
AGGAATCGCCAGTCAGTACGCCAGCGATGAAGGTTTGGACGAGATGGTGG
GTCTAAGGAGTCTGGAACACCGCGCGGAGGAGCAGCAGCCCGATCGCAGT
ACATCGAAAATGCTCAGTGCCCTATTCGGATTCAGTCCCAGCACTCCACA
TCCCACAGAGATGGCGATGGTCATGCCCCATCAGCTGCCGCCCATGTACT
ATAACGATTTCTATGAGGATCTGGTGACCACCAAACGCAATGATGTCCAT
TCCGCAGGCTGCGACTGCAAAGTTACGAATGAGCTCGTGGATCTGGGTGG
TCTGCACTTCCCTCGCTTTCTGATGAATGCCGTTTGCGAATCGGGCGCTG
GTCGGGATCTGGCCAAGTGCTCGCATGGATCCAATTGCAGGCCACTGGAA
TATAAGGTAAAGGTCCTGGCACAGACCTCTCAGTCCGATCACCCCTATTC
GTGGATGAACAAGGATCAACCTTGGCAGTTCAAAACGGTCACCGTAACTG
CCGGCTGCTTCTGCACAAAGTGAAAGCTTTCTAGACCAT
BS27715.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptth-RF | 657 | CG13687-PF | 1..657 | 17..673 | 3270 | 99.8 | Plus |
| Ptth-RE | 579 | CG13687-PE | 1..579 | 95..673 | 2895 | 100 | Plus |
| Ptth-RG | 555 | CG13687-PG | 1..555 | 119..673 | 2775 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:25:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptth-RF | 1019 | CG13687-RF | 297..953 | 17..673 | 3270 | 99.8 | Plus |
| Ptth-RE | 673 | CG13687-RE | 1..607 | 67..673 | 3020 | 99.8 | Plus |
| Ptth-RG | 782 | CG13687-RG | 146..716 | 103..673 | 2855 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 576081..576405 | 427..103 | 1625 | 100 | Minus |
| 2L | 23513712 | 2L | 575777..576023 | 673..427 | 1235 | 100 | Minus |
| 2L | 23513712 | 2L | 576514..576600 | 103..17 | 420 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:25:26 has no hits.
BS27715.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:01 Download gff for
BS27715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptth-RB | 297..952 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:58:41 Download gff for
BS27715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptth-RE | 297..952 | 17..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:18:20 Download gff for
BS27715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ptth-RF | 297..952 | 17..672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:18:20 Download gff for
BS27715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 575778..576022 | 428..672 | 100 | <- | Minus |
| 2L | 576081..576404 | 104..427 | 100 | <- | Minus |
| 2L | 576514..576600 | 17..103 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:58:41 Download gff for
BS27715.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 575778..576022 | 428..672 | 100 | <- | Minus |
| arm_2L | 576081..576404 | 104..427 | 100 | <- | Minus |
| arm_2L | 576514..576600 | 17..103 | 98 | | Minus |
BS27715.pep Sequence
Translation from 16 to 672
> BS27715.pep
MDIKVWRLLGQSCRRSTALVRHRSSRMPWLPISIMAMALLSLTNKGIASQ
YASDEGLDEMVGLRSLEHRAEEQQPDRSTSKMLSALFGFSPSTPHPTEMA
MVMPHQLPPMYYNDFYEDLVTTKRNDVHSAGCDCKVTNELVDLGGLHFPR
FLMNAVCESGAGRDLAKCSHGSNCRPLEYKVKVLAQTSQSDHPYSWMNKD
QPWQFKTVTVTAGCFCTK*
BS27715.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ptth-PF | 218 | CG13687-PF | 1..218 | 1..218 | 1167 | 99.5 | Plus |
| Ptth-PE | 192 | CG13687-PE | 1..192 | 27..218 | 1039 | 100 | Plus |
| Ptth-PG | 184 | CG13687-PG | 1..184 | 35..218 | 993 | 100 | Plus |
