BS27716.complete Sequence
857 bp assembled on 2011-09-27
GenBank Submission: KX802811
> BS27716.complete
GAAGTTATCAGTCGACATGAATCTTTTGTGGGCTATAGTGATTGTGGCCG
AACTGAAATGTCATACGGGCCATACTGTATTCCGAACTCGATGGCCCACA
TATGTACAGAAAAAACACTATAATATTCCAGTAAAGCCACCCGATTACTG
CAATGCAGACATTTGTCCGGCCAACAAGAAGCACATCACCTGCGGCTTCA
AATTTTGGTCTACGAAATGCGGTAGAAATCACGAGGGCGTCAGGATGAGC
GATTATCGCTATGATATCGTGAGGAATGTGAACAACTTTCGACGGAAGTT
GGAATGGGGCCTGGGGAATCTGCCCAGAGCGGTCAAATTTAAGAACATCA
AGTGGGACGATGAGCTGTCGGTGATGGCGATGCGGGTCTCTAATCAATGC
TTGCAGCACACTTTCTCACCCTGCGTGAATACGTTCCTCTACAAGGATGT
GGGCGAGTCCTCAGATTTCGTCAAGGTGCAGAACACTTCCAAGGGCTTCA
ACGTGATCAGCTTCCTGAATATGTGGTTCGAATACCACAAGATGATGAAG
CCCAGCTATGTGAACAACTTTCCCAATATAGCCCCTCAGGATCGGCTCAT
TATCTTCGCCAATCTGATCTACGAGAAGAACAAGAAAATGGGCTGCGGAA
TGGTGAAGTCGGGGCAGGGGCGCTTCCTGACCTGCCTCTTCGATAAGAAA
ATCAAGCCAAACCAGAAGCTTTACACCACTCGGTTGAATGATCCATTTCG
CACAAATCGGAAAACAAACGAAACAGAATCGATCCAATCGAATAGTAGTA
GCACAGAAGCAATTGTAAATTTGAACACAGCGTATAAATAGAAGCTTTCT
AGACCAT
BS27716.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:09:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11977-RB | 825 | CG11977-PB | 1..825 | 17..841 | 4125 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:09:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11977-RB | 857 | CG11977-RB | 5..829 | 17..841 | 4125 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:09:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 8998015..8998650 | 206..841 | 3180 | 100 | Plus |
| 3R | 32079331 | 3R | 8997701..8997820 | 17..136 | 600 | 100 | Plus |
| 3R | 32079331 | 3R | 8997878..8997951 | 132..205 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:09:11 has no hits.
BS27716.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 16:58:47 Download gff for
BS27716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11977-RB | 5..823 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:05:21 Download gff for
BS27716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11977-RB | 5..823 | 17..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:14:21 Download gff for
BS27716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11977-RB | 5..823 | 17..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:14:21 Download gff for
BS27716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 8997701..8997820 | 17..136 | 100 | -> | Plus |
| 3R | 8997883..8997951 | 137..205 | 100 | -> | Plus |
| 3R | 8998015..8998644 | 206..835 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:05:21 Download gff for
BS27716.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 4823423..4823542 | 17..136 | 100 | -> | Plus |
| arm_3R | 4823605..4823673 | 137..205 | 100 | -> | Plus |
| arm_3R | 4823737..4824366 | 206..835 | 100 | | Plus |
BS27716.pep Sequence
Translation from 16 to 840
> BS27716.pep
MNLLWAIVIVAELKCHTGHTVFRTRWPTYVQKKHYNIPVKPPDYCNADIC
PANKKHITCGFKFWSTKCGRNHEGVRMSDYRYDIVRNVNNFRRKLEWGLG
NLPRAVKFKNIKWDDELSVMAMRVSNQCLQHTFSPCVNTFLYKDVGESSD
FVKVQNTSKGFNVISFLNMWFEYHKMMKPSYVNNFPNIAPQDRLIIFANL
IYEKNKKMGCGMVKSGQGRFLTCLFDKKIKPNQKLYTTRLNDPFRTNRKT
NETESIQSNSSSTEAIVNLNTAYK*
BS27716.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11977-PB | 274 | CG11977-PB | 1..274 | 1..274 | 1498 | 100 | Plus |
| CG34002-PB | 350 | CG34002-PB | 27..258 | 43..257 | 183 | 24.7 | Plus |
| Ag5r2-PA | 254 | CG9540-PA | 20..195 | 43..214 | 151 | 25.8 | Plus |
