BS27718.complete Sequence
2978 bp assembled on 2013-09-16
GenBank Submission: KX805218
> BS27718.complete
GAAGTTATCAGTCGACATGTCGACAAACGAACCGAGCATTACTAACAAGT
TGCGTTCCCTCCTGCTAGATGACCAGGCGGCCAGGGATCGGCTGATGCTC
AAGCCGGCATTAGCCGTCTCCAAAGCGATCAGCCAGCACCGCTCCGAGTT
CCACCAGGACGAGAACGAGGCGGGAGCAGAAGGATCTGCAGCAAAACCAG
ATCCACCCATCGGAGCAGCCACGCCAACCAGGCAGGAAGGACACTGGGCC
CGACTGCAGCAAGATCTCAACAGCCCCAACGCTGCACTCCGATTACGCGC
CATTCGTGCATTAAAAAGCCCCACCAAGTCGGCATACAATACCTTCGATG
TGCCTTTAGCCGAACAAAGCATCATCACGATGGAAGAACGCAATCCCCAG
GAGCCGCCCTCCCTCCCCGAGTTGCTCAAGGACATAGTCGTATATGTGGA
GGTGCGAACTGGAAACGACAATCGCTCTGAGGGCGTAAAATCAATTATTG
CCAAGATGGGAGCCCAGGTCAAAGATCGCCTAACGCGAACCACCACACAC
GTTGTCTTCAAGGATGGCCTGCTCTCCACCTATAAAAAGGCCACCGAGTG
GAATATACCAGTCGTTTCCATTCTGTGGATTGAAGCTTGCAAGGTGCAGC
TGAAAATATGCGATCCCAAGCAATTTCCAATCAGCAATATACGCATGTAC
GAGTATCCCGAGCTCTTTGGCAAAATGCCGCGCGTTAAGTTCATGCAGCC
GGACTCCGAGTTGAATCAGCGACCCCGCAAACGCCAAGGAACACCCACAT
CCTCCAAGGACAACGAGCCAGGATCGACTAACAAACGAGCCCAGACCGGA
ACTCCAACAACCACCACACCAAAGAATGACATCAGCCGCTTTTTCAGAGC
CATTAACCACAATAAGCCATCGGATGATGAGGCAATAGAGTCGCCAGCCA
CCAAACTACTCAACAGGATAAGCAGTGGATGCTACACTCCTTTGCCGGCC
GGTGGCACTCCCCAGCTGATGGGAACCAATGGTAGTGGAGATGCGGTGGC
CCAAAAGGTGCAGGCCCAAAAGAGTTTGCAATTTGGAGAGCAGACGGACA
GCAATACCCCCCAGGCAAAACCATCGAGCACTTCACGCCCACGGCGGAGC
ACAGTGGATCCACCGCCGGTAATGACGCCACCAGTGCGCACCACTCGCCG
TCGTAGCTGCGTAGCTGAAATCAGCAGTCCTGCTGCAACGGATACGAGAA
TGACCCGCCGCAGAAGTTCGCTACTCACTTCCACGGTTATTCACGAGGCC
GATCCAACTCAAACCGCAGTTGCGGAACCCAGAATGACTCGTCGCAGGAG
CTCATTGCTAGGGATTGCCAAACAAGCAGAAGAAACCGCCCAAAGGCAAA
CCATTCAACCCATAACGGAGGAGCTGGCTCCCGTTGAAGAGAACAGGAAT
TCTATAATTATGGCCGAGACCAATATAATCAACAACACCAATTGTCTTGA
GCAATCAATTGAGATAACTGCCGTGGAGGCAGAAGCTTCTTTTAAAGCGG
ACAGACGTGGCACGCTCTATGCCTCAGAATTGATGGACATAAGTTCTCCT
CGTCGGCGCAGCGTGGCCAAGTCGAGCTTAGAGTTGAGGCAGGAAAACTT
AGCTCCGAGGGCCAGGCAGTCGCTCAGCAACGTGACTACTCAGACGTCCT
TTTTAGACGTTGAGCAGCAAGTGACGCCGCTGTTCAGCTCCACACGACTG
CCCACAGGCCAGACTACAGGAAATCGCAGGCGAACTATTTTTAACATGGA
CATGGACGTGATCAACGAGAGCATCGAAAGAATGAACCAGTCACATCGAA
TGTCCCTAGCCTTGGCCAATAAGGCGGAGCTGGGCGAGTCTTGCCAAGTC
CATGAACAAGAGCCACCGCAAGCAGAGCCAGTCCCATCACAAGAGCCCAA
AAGGCGGCGCCTTTTCAATCCAAACGACGAGGTGGTCATTTCGCCAGCGA
TGAGCAACAGAAAGAGTCGTTTGAGCATAACCGGATCCGGATCATCGAGC
TCGGTGCAGAAGCGTCGACGCTCGCTAGCCACTCCCGCAAAGTCTTCATC
ATCAGAGTTGTGTGCCACGACTCCTCTTTCCAAAGCCGTCACAAACAAGG
AGGCAGAAAAGTCCAAGAGCAATACAGAAATATCTGAGGCTTCGTTGGAT
GCCGTTCCGGAAGTGAAGAAATCTACATCAAACGCCGGGGAAGAGAATGA
GAAACCAAAGGGCAAATCACGTACACGGATTCGCACGCTAGTCCACACCA
ACATGCACCAGGAGCAGATCAACGTCATCCGCAAGGCCCTGCGCAAGTTA
CGCGGCATGCGGCTGGATCCAACCGTGACCCAGCACACCACCCACCTGGT
TAGCCTGGAGCCGCGACGTACCCTGAATCTCCTGCGCGGATTGATGCGCG
GAGTCTGGATAGTTAGCTACCAGTGGGTGTTGGCCTCCATTCGGGCTGGC
AAGTGGATCAATGAAGAGCCCTATGAGCTGACCAGGTTTTCGCGTGCAAT
CGAGATTTGTCGTACAGAAAGGCAGGCCTTTGGCGTCCACTACCAGTGTG
AGTTGTTTCGCTTTATGGAGCCCTTCTATGTGTCCTCCCTCTGCCGACCG
GTGCAGTTCAACAATATGAAGGAGCTGCTCCTGCTGGGCGGTGCCACCCT
GACCGAGAACCGCTTCAAGGCCAAGTACATCATCGGGGACAAGCGGCGCG
CCGAGGACGATCGCGTCTATCTCGATCCTTACTGGGTGCTGGACAGCATC
ACGAATATGCAAATTCAGCGCTTTGGCAAATATCTTATGAAGAGCGCCAT
TATCTCGGCCGATGGGATCCGGTACGAGGATCCTAGGGATCGCGATGAGG
ACAAAACACAAAGAAGGCACCTTCACGACTTCGTCGATCCACCGTTTGTG
CTGGACAAATAGAAGCTTTCTAGACCAT
BS27718.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RC | 2946 | CG42572-PC | 1..2946 | 17..2962 | 14730 | 100 | Plus |
| MCPH1-RD | 3087 | CG42572-PD | 192..3087 | 67..2962 | 14480 | 100 | Plus |
| MCPH1-RA | 2340 | CG42572-PA | 1..2320 | 17..2336 | 11600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-RC | 3149 | CG42572-RC | 75..3022 | 16..2963 | 14740 | 100 | Plus |
| MCPH1-RD | 3360 | CG42572-RD | 337..3233 | 67..2963 | 14485 | 100 | Plus |
| MCPH1-RA | 2661 | CG42572-RA | 75..2395 | 16..2336 | 11605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 11897108..11898479 | 2336..965 | 6860 | 100 | Minus |
| 2R | 25286936 | 2R | 11896124..11896534 | 2963..2553 | 2055 | 100 | Minus |
| 2R | 25286936 | 2R | 11903165..11903464 | 315..16 | 1500 | 100 | Minus |
| 2R | 25286936 | 2R | 11902619..11902840 | 537..316 | 1110 | 100 | Minus |
| 2R | 25286936 | 2R | 11896596..11896816 | 2554..2334 | 1105 | 100 | Minus |
| 2R | 25286936 | 2R | 11902358..11902551 | 730..537 | 970 | 100 | Minus |
| 2R | 25286936 | 2R | 11898919..11899063 | 874..730 | 725 | 100 | Minus |
| 2R | 25286936 | 2R | 11898546..11898640 | 967..873 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:01:46 has no hits.
BS27718.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:28 Download gff for
BS27718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RC | 76..3015 | 17..2956 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:46 Download gff for
BS27718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| MCPH1-RC | 76..3015 | 17..2956 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:46 Download gff for
BS27718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 11898919..11899062 | 731..874 | 100 | <- | Minus |
| 2R | 11903165..11903463 | 17..315 | 100 | | Minus |
| 2R | 11896131..11896532 | 2555..2956 | 100 | <- | Minus |
| 2R | 11896596..11896814 | 2336..2554 | 100 | <- | Minus |
| 2R | 11897109..11898477 | 967..2335 | 100 | <- | Minus |
| 2R | 11898547..11898638 | 875..966 | 100 | <- | Minus |
| 2R | 11902358..11902550 | 538..730 | 100 | <- | Minus |
| 2R | 11902619..11902840 | 316..537 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:28 Download gff for
BS27718.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7783636..7784037 | 2555..2956 | 100 | <- | Minus |
| arm_2R | 7784101..7784319 | 2336..2554 | 100 | <- | Minus |
| arm_2R | 7784614..7785982 | 967..2335 | 100 | <- | Minus |
| arm_2R | 7786052..7786143 | 875..966 | 100 | <- | Minus |
| arm_2R | 7786424..7786567 | 731..874 | 100 | <- | Minus |
| arm_2R | 7789863..7790055 | 538..730 | 100 | <- | Minus |
| arm_2R | 7790124..7790345 | 316..537 | 100 | <- | Minus |
| arm_2R | 7790670..7790968 | 17..315 | 100 | | Minus |
BS27718.pep Sequence
Translation from 16 to 2961
> BS27718.pep
MSTNEPSITNKLRSLLLDDQAARDRLMLKPALAVSKAISQHRSEFHQDEN
EAGAEGSAAKPDPPIGAATPTRQEGHWARLQQDLNSPNAALRLRAIRALK
SPTKSAYNTFDVPLAEQSIITMEERNPQEPPSLPELLKDIVVYVEVRTGN
DNRSEGVKSIIAKMGAQVKDRLTRTTTHVVFKDGLLSTYKKATEWNIPVV
SILWIEACKVQLKICDPKQFPISNIRMYEYPELFGKMPRVKFMQPDSELN
QRPRKRQGTPTSSKDNEPGSTNKRAQTGTPTTTTPKNDISRFFRAINHNK
PSDDEAIESPATKLLNRISSGCYTPLPAGGTPQLMGTNGSGDAVAQKVQA
QKSLQFGEQTDSNTPQAKPSSTSRPRRSTVDPPPVMTPPVRTTRRRSCVA
EISSPAATDTRMTRRRSSLLTSTVIHEADPTQTAVAEPRMTRRRSSLLGI
AKQAEETAQRQTIQPITEELAPVEENRNSIIMAETNIINNTNCLEQSIEI
TAVEAEASFKADRRGTLYASELMDISSPRRRSVAKSSLELRQENLAPRAR
QSLSNVTTQTSFLDVEQQVTPLFSSTRLPTGQTTGNRRRTIFNMDMDVIN
ESIERMNQSHRMSLALANKAELGESCQVHEQEPPQAEPVPSQEPKRRRLF
NPNDEVVISPAMSNRKSRLSITGSGSSSSVQKRRRSLATPAKSSSSELCA
TTPLSKAVTNKEAEKSKSNTEISEASLDAVPEVKKSTSNAGEENEKPKGK
SRTRIRTLVHTNMHQEQINVIRKALRKLRGMRLDPTVTQHTTHLVSLEPR
RTLNLLRGLMRGVWIVSYQWVLASIRAGKWINEEPYELTRFSRAIEICRT
ERQAFGVHYQCELFRFMEPFYVSSLCRPVQFNNMKELLLLGGATLTENRF
KAKYIIGDKRRAEDDRVYLDPYWVLDSITNMQIQRFGKYLMKSAIISADG
IRYEDPRDRDEDKTQRRHLHDFVDPPFVLDK*
BS27718.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| MCPH1-PC | 981 | CG42572-PC | 1..981 | 1..981 | 5006 | 100 | Plus |
| MCPH1-PD | 1028 | CG42572-PD | 65..1028 | 18..981 | 4925 | 100 | Plus |
| MCPH1-PA | 779 | CG8981-PA | 1..773 | 1..773 | 3905 | 100 | Plus |
| MCPH1-PB | 826 | CG8981-PB | 65..820 | 18..773 | 3824 | 100 | Plus |
