BS27720.complete Sequence
977 bp assembled on 2011-10-21
GenBank Submission: KX804574
> BS27720.complete
GAAGTTATCAGTCGACATGTTTTTGCGTTGGGTTATTGAAAAGCCCCCCT
TTAAATTCGATGACGATGAGGAGCACTTTAATGCTACGTTAGCGAAACTA
CTAAAGCCTCGATCTGTGGGCAGCAAAGGGCATGCCGAGGTTCAAGATTT
CATCGAGACGGAACTGAAGCGTTTGGATTTCATCACATTAAAGAATGACT
TCCAACAAGGAGTCAATATTACCAATTTGGTAGGCTTTTGGAATATGAGG
GCTAAGTTTTATCTGATGCTAACCTGTCACTACGACAGCAAAAAGCCAGA
AAATGTGACCACCGATGAGTTCCTTGCAGCCGCAGAAGGCGCTGTATCGT
GTGCCATTCTTCTTAACGTGGCCAAAACATTGAGACAATTTTTAATAGAT
AGGTGGTCTGAAAAAAAGTCCGTGGGACTGGCTTTTATCTTCTTCGACGG
GCACAATTCCTTAAGCTCAGATCCTTATGACGAAAATGAACTTTTGGGCG
CAACACACTTTATAGATGAAGAATTTATACCTTTGCGCGACATGGCTGTT
GCAGTAACTCTCAGCTATATTGGCGCGCCAAATCAAACCTTTTTGAGCTT
CTTTGAAGTTACCAATGATTTGCACAACCTGATTGCTGACATCGAACAGG
ATCTCAGAAAATCCGGAGAACTCGACGACTGTCATGTGTTATTCCAAAAG
AAAACACATTACGACAAAGATCTGCTTGACGATCATATTGTATTCGACGA
ACAAGATGTGCCAGTCATTCATGTGAGTCCACATGAATTTCCAAATGTTC
TTTATACGCCAGCGGACAATGTCGAGAATCTACACTATCCTACCATTCGC
AATATGATCAAAATTATTCGCTGTTTTGTGCATGATTTCTATGAAAAGTG
GCAATACTTTATGAAATGGCGACAAGCTTTTGCAATAAATTATGATTTTT
ATGATGACTAAAAGCTTTCTAGACCAT
BS27720.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 22:27:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32413-RC | 945 | CG32413-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:27:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32413-RC | 996 | CG32413-RC | 52..996 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 22:27:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 5903585..5904001 | 433..17 | 2085 | 100 | Minus |
| 3L | 28110227 | 3L | 5903151..5903362 | 755..544 | 1060 | 100 | Minus |
| 3L | 28110227 | 3L | 5902886..5903094 | 962..754 | 1045 | 100 | Minus |
| 3L | 28110227 | 3L | 5903416..5903527 | 545..434 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 22:27:45 has no hits.
BS27720.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-21 15:28:15 Download gff for
BS27720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 60..994 | 25..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:58:58 Download gff for
BS27720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 60..994 | 25..959 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 23:01:50 Download gff for
BS27720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32413-RC | 60..994 | 25..959 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 23:01:50 Download gff for
BS27720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 5903151..5903361 | 545..755 | 100 | <- | Minus |
| 3L | 5903417..5903527 | 434..544 | 100 | <- | Minus |
| 3L | 5902889..5903092 | 756..959 | 100 | <- | Minus |
| 3L | 5903585..5903993 | 25..433 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:58:58 Download gff for
BS27720.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 5896251..5896461 | 545..755 | 100 | <- | Minus |
| arm_3L | 5896517..5896627 | 434..544 | 100 | <- | Minus |
| arm_3L | 5895989..5896192 | 756..959 | 100 | <- | Minus |
| arm_3L | 5896685..5897093 | 25..433 | 100 | | Minus |
BS27720.pep Sequence
Translation from 16 to 960
> BS27720.pep
MFLRWVIEKPPFKFDDDEEHFNATLAKLLKPRSVGSKGHAEVQDFIETEL
KRLDFITLKNDFQQGVNITNLVGFWNMRAKFYLMLTCHYDSKKPENVTTD
EFLAAAEGAVSCAILLNVAKTLRQFLIDRWSEKKSVGLAFIFFDGHNSLS
SDPYDENELLGATHFIDEEFIPLRDMAVAVTLSYIGAPNQTFLSFFEVTN
DLHNLIADIEQDLRKSGELDDCHVLFQKKTHYDKDLLDDHIVFDEQDVPV
IHVSPHEFPNVLYTPADNVENLHYPTIRNMIKIIRCFVHDFYEKWQYFMK
WRQAFAINYDFYDD*
BS27720.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:36:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32413-PC | 314 | CG32413-PC | 1..314 | 1..314 | 1683 | 100 | Plus |
| QC-PA | 340 | CG32412-PA | 36..328 | 16..294 | 462 | 37.4 | Plus |
| isoQC-PA | 352 | CG5976-PA | 58..344 | 17..291 | 348 | 33.3 | Plus |
| isoQC-PB | 354 | CG5976-PB | 60..346 | 17..291 | 348 | 33.3 | Plus |
| CG6168-PC | 342 | CG6168-PC | 59..330 | 17..291 | 275 | 29.4 | Plus |
