BS27721.complete Sequence
659 bp assembled on 2011-09-22
GenBank Submission: KX802211
> BS27721.complete
GAAGTTATCAGTCGACATGCGTCTTCATTGTGATAGGATTTGTTCACTGG
ATCCTGGTGCTAACCTTGCTGCACGAATGGTTTCTGGTCTTGGTAAACGA
GCACTCATCTGCATTGCTCCTAGCCTTTGTATTTGGCATTTTCCTACTTT
TCCTGTTTGCCCTAAGTATGCCGCTAAGGAAAATGTCCTGTGTCAACTGG
CTGATTACGTTTATTATCTTTCTCTCAGTGTGCTGATCATATCATCGGGA
GTACTTTATATGCTTGCCGGATTTCTGATTGTCAGCCTTGCATTTGTGTT
ATGTACACTTATAGCTGCTTTAATGGCGTATGACCTCACAGGCACCGGAC
TCTACCTATATGCCCTTGCAACTGGCACTTACTCACTGAGCATATACTCC
CTGGTATTGTATGTGGTTCTCGACGTGATCTGGGGATTTTATCTCTTCGC
ATTCTGTATCGGCTGTGTGGTGATGATGTTCCTGATGTATCATGTGCAGT
GCATCATGGGCGGAAGAAGGGCCTCGACCAAGTTGTTCGATGACAAGTTC
GCCGCCCTGCTGCTGTTCCACGAGTTCATAGGCCTCTTTGTGCTAACCCT
CTACTGGCGGCCCATAATGCATCGCCTGCAGTTGAAACAATAAAAGCTTT
CTAGACCAT
BS27721.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:27:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32391-RB | 627 | CG32391-PB | 1..627 | 17..643 | 3135 | 100 | Plus |
| CG32391-RA | 630 | CG32391-PA | 1..630 | 17..643 | 2710 | 95.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:27:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32391-RB | 748 | CG32391-RB | 91..718 | 17..644 | 3140 | 100 | Plus |
| CG32391-RA | 751 | CG32391-RA | 91..721 | 17..644 | 2715 | 95.5 | Plus |
| CG14823-RA | 2098 | CG14823-RA | 876..1042 | 644..478 | 835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:27:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7068241..7068407 | 644..478 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 7068471..7068621 | 478..328 | 755 | 100 | Minus |
| 3L | 28110227 | 3L | 7068854..7068998 | 218..74 | 725 | 100 | Minus |
| 3L | 28110227 | 3L | 7068674..7068783 | 328..219 | 550 | 100 | Minus |
| 3L | 28110227 | 3L | 7069051..7069107 | 73..17 | 285 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:27:17 has no hits.
BS27721.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:03 Download gff for
BS27721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 91..708 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:04 Download gff for
BS27721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 91..708 | 17..634 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:08 Download gff for
BS27721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32391-RB | 91..708 | 17..634 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:08 Download gff for
BS27721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7068251..7068406 | 479..634 | 100 | <- | Minus |
| 3L | 7068471..7068620 | 329..478 | 100 | <- | Minus |
| 3L | 7068674..7068783 | 219..328 | 100 | <- | Minus |
| 3L | 7068854..7068998 | 74..218 | 100 | <- | Minus |
| 3L | 7069051..7069107 | 17..73 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:04 Download gff for
BS27721.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7062151..7062207 | 17..73 | 100 | | Minus |
| arm_3L | 7061351..7061506 | 479..634 | 100 | <- | Minus |
| arm_3L | 7061571..7061720 | 329..478 | 100 | <- | Minus |
| arm_3L | 7061774..7061883 | 219..328 | 100 | <- | Minus |
| arm_3L | 7061954..7062098 | 74..218 | 100 | <- | Minus |
BS27721.pep Sequence
Translation from 16 to 642
> BS27721.pep
MRLHCDRICSLDPGANLAARMVSGLGKRALICIAPSLCIWHFPTFPVCPK
YAAKENVLCQLADYVYYLSLSVLIISSGVLYMLAGFLIVSLAFVLCTLIA
ALMAYDLTGTGLYLYALATGTYSLSIYSLVLYVVLDVIWGFYLFAFCIGC
VVMMFLMYHVQCIMGGRRASTKLFDDKFAALLLFHEFIGLFVLTLYWRPI
MHRLQLKQ*
BS27721.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG32391-PB | 208 | CG32391-PB | 1..208 | 1..208 | 1090 | 100 | Plus |
| CG32391-PA | 209 | CG32391-PA | 1..209 | 1..208 | 871 | 80 | Plus |
| CG12209-PA | 285 | CG12209-PA | 111..225 | 82..196 | 196 | 32.2 | Plus |
| CG34315-PB | 266 | CG34315-PB | 97..228 | 68..199 | 163 | 31.1 | Plus |
| CG42571-PB | 292 | CG42571-PB | 91..224 | 69..198 | 145 | 29.9 | Plus |
