Clone BS27723 Report

Search the DGRC for BS27723

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:23
Vector:pDNR-Dual
Associated Gene/TranscriptPhae2-RB
Protein status:BS27723.pep: gold
Sequenced Size:830

Clone Sequence Records

BS27723.complete Sequence

830 bp assembled on 2011-09-22

GenBank Submission: KX800336

> BS27723.complete
GAAGTTATCAGTCGACATGTGGCGCCATCGCCACCTGGCCACTATCCTCC
TGCTGGCGGTGTGCGTTTCCCAAGGATCTGGATTAGCCTTGGACCAACCC
GAAGGACGCGTTGTGGGTGGAAAAGCGGCGGCGGCCAATAGTGCTCCGTA
TATAGTGTCCATGCAGTACGGAGGAACTCACTATTGCGCCGCTAACATCA
TTAATTCCAACTGGCTGGTAACGGCTGCTCACTGCCTGGCCAATAGGAAT
CAAGTACTTGGAAGCACCCTGGTGGCTGGAAGCATTGCGGTGGCCGGAAC
AGCGAGCACAACACAGAAGAGGCAAATCACCCACTATGTGATCAATGATC
TTTATACCGGCGGAACTGTGCCCTATGACATCGGATTGATTTACACGCCC
ACCGCCTTCACTTGGACCGCTGCAGTGGCTCCGGTGAAGCTGCCATCGTC
CGGCGTGAGGCCAACTGGAAAGGCTGACCTCTTTGGCTGGGGCAGTACTA
GCAAAACGAATAGCCCCTCATATCCGAAAACCCTCCAGGAGGCGAAGAAC
ATACCCATCATAAGCCTCGACTCCTGCGCTGCGGCACTTGGCTCTAAGGG
TCAGGATGTGCACACCACGAACCTGTGCACAGGTCCTCTCACCGGCGGCA
CCAGCTTTTGCACCTCGGACTCCGGTGGTCCGCTGGTCCAGGGAAACGTT
CTAATCGGCATCGTGTCTTGGGGAAAACTTCCATGTGGTCAGCCCAACTC
TCCGTCGGTGTATGTCCAGGTCTCCTCGTTCATAACATGGATAGCAGCCA
ACCAAAAGAAATGAAAGCTTTCTAGACCAT

BS27723.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:22:26
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-RC 798 CG16997-PC 1..798 17..814 3990 100 Plus
Phae2-RB 798 CG16997-PB 1..798 17..814 3990 100 Plus
Phae1-RB 813 CG16996-PB 93..800 97..804 1065 76.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:22:28
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-RC 1147 CG16997-RC 38..837 16..815 4000 100 Plus
Phae2-RB 886 CG16997-RB 38..837 16..815 4000 100 Plus
Phae1-RB 1248 CG16996-RB 319..1026 97..804 1065 76.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 12111147..12111946 16..815 4000 100 Plus
2L 23513712 2L 12109735..12110442 97..804 1065 76.7 Plus
Blast to na_te.dros performed on 2014-11-27 08:22:25 has no hits.

BS27723.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:59 Download gff for BS27723.complete
Subject Subject Range Query Range Percent Splice Strand
CG16997-RB 16..812 17..813 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:59 Download gff for BS27723.complete
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 39..835 17..813 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:17:03 Download gff for BS27723.complete
Subject Subject Range Query Range Percent Splice Strand
Phae2-RB 39..835 17..813 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:17:03 Download gff for BS27723.complete
Subject Subject Range Query Range Percent Splice Strand
2L 12111148..12111944 17..813 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:59 Download gff for BS27723.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 12111148..12111944 17..813 100   Plus

BS27723.pep Sequence

Translation from 16 to 813

> BS27723.pep
MWRHRHLATILLLAVCVSQGSGLALDQPEGRVVGGKAAAANSAPYIVSMQ
YGGTHYCAANIINSNWLVTAAHCLANRNQVLGSTLVAGSIAVAGTASTTQ
KRQITHYVINDLYTGGTVPYDIGLIYTPTAFTWTAAVAPVKLPSSGVRPT
GKADLFGWGSTSKTNSPSYPKTLQEAKNIPIISLDSCAAALGSKGQDVHT
TNLCTGPLTGGTSFCTSDSGGPLVQGNVLIGIVSWGKLPCGQPNSPSVYV
QVSSFITWIAANQKK*

BS27723.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:01
Subject Length Description Subject Range Query Range Score Percent Strand
Phae2-PC 265 CG16997-PC 1..265 1..265 1395 100 Plus
Phae2-PB 265 CG16997-PB 1..265 1..265 1395 100 Plus
Phae1-PB 270 CG16996-PB 9..268 5..264 1082 78.5 Plus
Phae1-PA 270 CG16996-PA 9..268 5..264 1082 78.5 Plus
CG7142-PA 334 CG7142-PA 84..323 36..259 597 49.4 Plus