Clone BS27727 Report

Search the DGRC for BS27727

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:27
Vector:pDNR-Dual
Associated Gene/TranscriptCG42635-RA
Protein status:BS27727.pep: full length peptide match
Sequenced Size:431

Clone Sequence Records

BS27727.complete Sequence

431 bp assembled on 2011-09-22

GenBank Submission: KX800567

> BS27727.complete
GAAGTTATCAGTCGACATGGAAATGGTTCACACGGCCATCGGAGTTGCGG
GCATAGTGGCCCTGTTTATGGTAGTTTCCCGTTCGTTAACTGAAGTGGGT
GGCAGGGTGTTAAACCAAACCCGTGATCCGATCGCTGACCTTGTGAGGCG
CGGTGGTCCAGTGGCGGATCAGCTGTCCGCCGTCGAGGGCGAAACTCCTC
TAGTAGAGGGCGATCGCATGGATGGCGCCTGCTCCGTGGTACAAAGTATT
GGAGGCAAGGCATGTGCCTTTGTAGGACCATTGCTTCCTAAGTTTGGCAG
TGAACATAATTCCGAGGGCTCCTCCAAGGAAGACGAAAAGGATAAAAAGG
ACTCGGAACCGGTAGTAGTAAAACCTGAAACACCGCCAGCGGCAGAATTA
ACCGAAGAGGAGTAGAAGCTTTCTAGACCAT

BS27727.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:29:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG42635-RA 399 CG42635-PA 1..399 17..415 1995 100 Plus
CG42635-RB 399 CG42635-PB 1..399 17..415 1995 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:29:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG42635-RA 1028 CG42635-RA 494..892 17..415 1995 100 Plus
CG42635-RB 637 CG42635-RB 103..501 17..415 1995 100 Plus
CG42634-RA 1028 CG42634-RA 494..892 17..415 1995 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:29:19
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18008428..18008826 17..415 1995 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:29:20 has no hits.

BS27727.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:04 Download gff for BS27727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42635-RA 494..892 17..415 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:22 Download gff for BS27727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42635-RA 494..892 17..415 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:20:03 Download gff for BS27727.complete
Subject Subject Range Query Range Percent Splice Strand
CG42634-RA 494..892 17..415 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:20:03 Download gff for BS27727.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18008428..18008826 17..415 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:22 Download gff for BS27727.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18008428..18008826 17..415 100   Plus

BS27727.pep Sequence

Translation from 16 to 414

> BS27727.pep
MEMVHTAIGVAGIVALFMVVSRSLTEVGGRVLNQTRDPIADLVRRGGPVA
DQLSAVEGETPLVEGDRMDGACSVVQSIGGKACAFVGPLLPKFGSEHNSE
GSSKEDEKDKKDSEPVVVKPETPPAAELTEEE*

BS27727.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG42635-PA 132 CG42635-PA 1..132 1..132 668 100 Plus
CG42635-PB 132 CG42635-PB 1..132 1..132 668 100 Plus