Clone BS27730 Report

Search the DGRC for BS27730

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:30
Vector:pDNR-Dual
Associated Gene/TranscriptCG42559-RA
Protein status:BS27730.pep: full length peptide match
Sequenced Size:491

Clone Sequence Records

BS27730.complete Sequence

491 bp assembled on 2011-09-22

GenBank Submission: KX800193

> BS27730.complete
GAAGTTATCAGTCGACATGTTTCCTGTTGCACGAATCTTAGGCTCGGCAT
CGTGCAACAGGCTATTTCAACCTCAGGTGCTATGTCAAGAAAGAGTTTGT
TGGCCTTCCAATGAGTTGCACAGAAATTTACCAAGGCATAGAAACTTTTA
CCACGGTAGAAACATTTTCCACCCAAGGTCGAATAATAATTTAAACGAAT
TTCCTGCTAAACGTCAATTCACTGACAAATTTTCCGAGAAGGGCAGAGGC
GAGGAACTTAACTATGTTCTCAAACTTGCCTCAGAGCAATTTATGAAGAT
AAAAAAGAACAGGGTTAAAGAAATCGCCAATGATATCGTCAAATTGAAAG
AGGAGATCAAGATTTTGGAATCCAAAACTAGCCACAAATCAAGGAAACAC
AAGGAGAATCTGCTAAAGGAATTGAAAGCTCTGAAGGATTTGTTGGAGCA
ATTCAAAAAGAGTCTCGAAAAATGAAAGCTTTCTAGACCAT

BS27730.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-RC 459 CG42559-PC 1..459 17..475 2295 100 Plus
CG42559-RB 459 CG42559-PB 1..459 17..475 2295 100 Plus
CG42559-RA 459 CG42559-PA 1..459 17..475 2295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG42560-RA 880 CG42560-RA 100..559 16..475 2300 100 Plus
CG42559-RC 942 CG42559-RC 100..559 16..475 2300 100 Plus
CG42559-RB 939 CG42559-RB 100..559 16..475 2300 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23600058..23600255 475..278 990 100 Minus
2R 25286936 2R 23600439..23600550 210..99 560 100 Minus
2R 25286936 2R 23600605..23600688 99..16 420 100 Minus
2R 25286936 2R 23600313..23600380 278..211 340 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:32:02 has no hits.

BS27730.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:06 Download gff for BS27730.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RA 107..551 23..467 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:51 Download gff for BS27730.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RB 107..551 23..467 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:13 Download gff for BS27730.complete
Subject Subject Range Query Range Percent Splice Strand
CG42559-RB 107..551 23..467 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:13 Download gff for BS27730.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23600605..23600681 23..99 100   Minus
2R 23600314..23600380 211..277 100 <- Minus
2R 23600439..23600549 100..210 100 <- Minus
2R 23600066..23600255 278..467 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:51 Download gff for BS27730.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19487589..19487778 278..467 100 <- Minus
arm_2R 19487837..19487903 211..277 100 <- Minus
arm_2R 19487962..19488072 100..210 100 <- Minus
arm_2R 19488128..19488204 23..99 100   Minus

BS27730.pep Sequence

Translation from 16 to 474

> BS27730.pep
MFPVARILGSASCNRLFQPQVLCQERVCWPSNELHRNLPRHRNFYHGRNI
FHPRSNNNLNEFPAKRQFTDKFSEKGRGEELNYVLKLASEQFMKIKKNRV
KEIANDIVKLKEEIKILESKTSHKSRKHKENLLKELKALKDLLEQFKKSL
EK*

BS27730.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG42559-PC 152 CG42559-PC 1..152 1..152 794 100 Plus
CG42559-PB 152 CG42559-PB 1..152 1..152 794 100 Plus
CG42559-PA 152 CG42559-PA 1..152 1..152 794 100 Plus