BS27731.complete Sequence
1136 bp assembled on 2011-09-22
GenBank Submission: KX806412
> BS27731.complete
GAAGTTATCAGTCGACATGAAGGTGATCGCAGCCGTTTTGCTGTGCTTAT
TGATTATCCGCACGGCCCATGGACAGTACGTGAGTTGCCGGAATCCCAAC
CAGCGGACTGGATATTGCGTGAACATCCCCTTGTGTGTGCCACTGAATTC
CGTGCTGGCGAAGAGTAATCCTACAGACTCCGAGATGCGGTTCATCCGAG
AATCCCGTTGCCTCGTATCTGACCAGAGCGATCTGCCATTCGTCTGCTGC
ACTCCGGATACGGACTACAACACGACGCGTGCTAGACCTAACGACGAAGT
GATACATTCCACTTTGCTTCCCGATCGGTCCATCTGTGGGGGCGATATAG
CGTACAACCAGATCACGAAAGGCAACGAAACCGTTCTCACTGAATTCGCC
TGGATGGTGCTGTTAGAGTACCGTCCTCATGATGGACAACAATTGAGAAC
GTACTGCGCGGGATCACTGATCAATAATCGATATGTTGTAACAGCGGCTC
ACTGCGTGTCGGCTGCTACTAGGGCCCGCAAAGGAGATGTAGTCTCTGTG
AGATTGGGCGAGCATAACACCAGTGCCGTGGTGGATTGCCTCAATGGAAG
GTGCCTACCGGAACCTGTGCAAATCGCGGTCGAGGAGATCCGCATACATG
AAAGCTTCGGTACCCGATTGTTTTGGAACGACATTGCTCTGATCCGTTTG
GCGAGAGAGGTTGCCTATTCGCCCAGCATTCGACCTGTTTGCTTGCCCTC
GACTGTGGGTCTGCAAAACTGGCAATCCGGCCAGGCGTTTACCGTGGCAG
GATGGGGTAGAACCCTCACCAGCGAAAGCAGTCCCGTCAAGATGAAATTG
AGGGTAACGTACGTGGAGCCTGGCCTGTGTCGTCGCAAGTATGCTAGCAT
AGTGGTCCTGGGTGACTCCCACTTGTGCGCCGAAGGTAGAAGTCGGGGTG
ATAGCTGCGATGGGGACTCCGGCGGACCACTGATGGCATTCCACGAGGGC
GTTTGGGTCCTTGGGGGCATTGTGTCCTTTGGCCTGAACTGCGGCTCACG
ATTCTGGCCAGCTGTCTACACAAATGTTCTTTCTTACGAAACGTGGATCA
CGCAGAATATACGACCTTAAAAGCTTTCTAGACCAT
BS27731.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:32:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11313-RC | 1104 | CG11313-PC | 1..1104 | 17..1120 | 5490 | 99.8 | Plus |
| CG11313-RD | 1113 | CG11313-PD | 1..1113 | 17..1120 | 5365 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:32:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11313-RC | 1213 | CG11313-RC | 20..1123 | 17..1120 | 5490 | 99.8 | Plus |
| CG11313-RD | 1222 | CG11313-RD | 20..1132 | 17..1120 | 5365 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:32:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30729927..30730506 | 1120..541 | 2885 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30730569..30731031 | 540..78 | 2300 | 99.8 | Minus |
| 3R | 32079331 | 3R | 30731086..30731146 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:32:26 has no hits.
BS27731.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:06 Download gff for
BS27731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RB | 211..1312 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:57 Download gff for
BS27731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 20..1121 | 17..1118 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:21:23 Download gff for
BS27731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11313-RC | 20..1121 | 17..1118 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:21:23 Download gff for
BS27731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30729929..30730506 | 541..1118 | 99 | <- | Minus |
| 3R | 30730569..30731031 | 78..540 | 99 | <- | Minus |
| 3R | 30731086..30731146 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:57 Download gff for
BS27731.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26555651..26556228 | 541..1118 | 99 | <- | Minus |
| arm_3R | 26556291..26556753 | 78..540 | 99 | <- | Minus |
| arm_3R | 26556808..26556868 | 17..77 | 100 | | Minus |
BS27731.pep Sequence
Translation from 16 to 1119
> BS27731.pep
MKVIAAVLLCLLIIRTAHGQYVSCRNPNQRTGYCVNIPLCVPLNSVLAKS
NPTDSEMRFIRESRCLVSDQSDLPFVCCTPDTDYNTTRARPNDEVIHSTL
LPDRSICGGDIAYNQITKGNETVLTEFAWMVLLEYRPHDGQQLRTYCAGS
LINNRYVVTAAHCVSAATRARKGDVVSVRLGEHNTSAVVDCLNGRCLPEP
VQIAVEEIRIHESFGTRLFWNDIALIRLAREVAYSPSIRPVCLPSTVGLQ
NWQSGQAFTVAGWGRTLTSESSPVKMKLRVTYVEPGLCRRKYASIVVLGD
SHLCAEGRSRGDSCDGDSGGPLMAFHEGVWVLGGIVSFGLNCGSRFWPAV
YTNVLSYETWITQNIRP*
BS27731.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11313-PC | 367 | CG11313-PC | 1..367 | 1..367 | 1960 | 100 | Plus |
| CG11313-PD | 370 | CG11313-PD | 1..370 | 1..367 | 1946 | 99.2 | Plus |
| CG9733-PB | 417 | CG9733-PB | 1..416 | 1..366 | 883 | 46.3 | Plus |
| CG9733-PA | 418 | CG9733-PA | 1..417 | 1..366 | 866 | 46.2 | Plus |
| Sp7-PF | 391 | CG3066-PF | 12..391 | 4..367 | 652 | 39.2 | Plus |
