BS27733.complete Sequence
884 bp assembled on 2011-09-22
GenBank Submission: KX804686
> BS27733.complete
GAAGTTATCAGTCGACATGCACTTGTTGCAAGAGCCGGTCAATAAATTAA
AATTTTTCCATGCACTTGTTGCAGGAGGAGTGGCTGGAATGGTAGTGGAC
ATAGCGCTGTTTCCCATAGATACAGTGAAGACCCGACTGCAAAGCGAGCT
GGGCTTTTGGCGGGCAGGAGGATTCAGGGGCATCTACAAAGGACTCGCTC
CTGCGGCTGCAGGAAGTGCTCCCACGGCGGCCCTGTTTTTCTGCACCTAC
GAGTGCGGAAAGCAGTTCCTTAGTTCGGTCACCCAAACCAAAGATTCACC
CTATGTTCACATGGCAGCGGCTTCAGCAGCAGAAGTGTTGGCATGCTTGA
TCCGAGTTCCCGTGGAGATTGCCAAGCAACGCTCCCAAACATTGCAGGGC
AACAAACAGTCCGGCCTGCAAATTCTACTGCGTGCCTATCGCACTGAGGG
ATTGAAACGTGGTCTGTACAGGGGATTTGGTTCCACTATCATGCGGGAGA
TTCCATTTAGTCTGATACAGTTTCCGCTCTGGGAGTACTTTAAGCTGCAA
TGGACTCCCCTGACCGGCTTCGATTCCACTCCTTTTTCGGTGGCTCTTTG
TGGAGCTGTCGCTGGAGGCATTTCAGCGGGATTAACTACGCCGCTCGATG
TGGTCAAAACCCGAATTATGCTGGCTGAAAGGGAGAGTCTCAACCGACGT
CGCAGTGCCCGAAGAATTTTGCATGGCATTTACCTGGAGCGAGGCTTCAG
CGGTCTGTTTGCTGGCTTTGTGCCGCGTGTGCTGTGGATCACACTGGGCG
GTGCATTCTTCTTTGGCTTCTACGACCTGACGACGCGAATCCTTGGCGCC
ACCAGTACGGATCATTAAAAGCTTTCTAGACCAT
BS27733.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:33:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4743-RA | 894 | CG4743-PA | 53..894 | 27..868 | 4210 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:33:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4743-RA | 1082 | CG4743-RA | 117..960 | 27..870 | 4220 | 100 | Plus |
| CG5039-RA | 719 | CG5039-RA | 554..671 | 870..753 | 590 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:33:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25679593..25680009 | 753..337 | 2085 | 100 | Minus |
| 3R | 32079331 | 3R | 25680072..25680338 | 337..71 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 25679364..25679481 | 870..753 | 590 | 100 | Minus |
| 3R | 32079331 | 3R | 25680390..25680434 | 71..27 | 225 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:33:39 has no hits.
BS27733.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:08 Download gff for
BS27733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..956 | 27..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:15 Download gff for
BS27733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..956 | 27..866 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:22:00 Download gff for
BS27733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4743-RA | 117..956 | 27..866 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:22:00 Download gff for
BS27733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25680391..25680434 | 27..70 | 100 | | Minus |
| 3R | 25679368..25679480 | 754..866 | 100 | <- | Minus |
| 3R | 25679593..25680008 | 338..753 | 100 | <- | Minus |
| 3R | 25680072..25680338 | 71..337 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:15 Download gff for
BS27733.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21505794..21506060 | 71..337 | 100 | <- | Minus |
| arm_3R | 21506113..21506156 | 27..70 | 100 | | Minus |
| arm_3R | 21505090..21505202 | 754..866 | 100 | <- | Minus |
| arm_3R | 21505315..21505730 | 338..753 | 100 | <- | Minus |
BS27733.pep Sequence
Translation from 16 to 867
> BS27733.pep
MHLLQEPVNKLKFFHALVAGGVAGMVVDIALFPIDTVKTRLQSELGFWRA
GGFRGIYKGLAPAAAGSAPTAALFFCTYECGKQFLSSVTQTKDSPYVHMA
AASAAEVLACLIRVPVEIAKQRSQTLQGNKQSGLQILLRAYRTEGLKRGL
YRGFGSTIMREIPFSLIQFPLWEYFKLQWTPLTGFDSTPFSVALCGAVAG
GISAGLTTPLDVVKTRIMLAERESLNRRRSARRILHGIYLERGFSGLFAG
FVPRVLWITLGGAFFFGFYDLTTRILGATSTDH*
BS27733.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4743-PA | 297 | CG4743-PA | 18..297 | 4..283 | 1439 | 99.6 | Plus |
| mfrn-PA | 379 | CG4963-PA | 18..281 | 17..269 | 255 | 28.9 | Plus |
| CG2616-PB | 449 | CG2616-PB | 80..415 | 3..270 | 220 | 25.6 | Plus |
| CG2616-PA | 449 | CG2616-PA | 80..415 | 3..270 | 220 | 25.6 | Plus |
| Bmcp-PB | 303 | CG7314-PB | 1..298 | 8..270 | 209 | 26.7 | Plus |
