BS27734.complete Sequence
1436 bp assembled on 2011-09-27
GenBank Submission: KX802636
> BS27734.complete
GAAGTTATCAGTCGACATGACTACCTATACAAGGAAATACTGGACACTTG
TACTCTACCTCTTTTCTTTTTCACTTTCCTTGATCGGCGGCTCCTTCATA
TTGCCAGAGAATGACCCTCCCACAACGGCGCCAAAGTTCTTATCCAGAGG
TCACTTGTACAAGGTCATCGTGGGGGAGACCATCGAGCTGCCCTGCAAAG
TACAGAACCTCGGCTCCTTTGTGCTCCTGTGGCGAAAGGGCTCATCCGTG
CTCACAGCCGGACATTTGAAAATAACAAGGGATCAGCGCTTTAAGATAGT
GGGCGACTATAACTTGCAGATCAATGGAGTAAAGACTCAAGACGCTGGAG
ATTATATATGCCAGCTGGGAGATCAGGAGAACCGTGACCAAGTTCACACG
GTGGAAATCTTGGTTCCGCCCACCCTGAGGGCTCTGCCTCATAACGGCCA
AGTGACTGCCCGGAAGGGAAGCACCGTCACCCTGGAATGCAAGGCGTCTG
GTAACCCGGTGCCCACCATATTTTGGTTCAAGAAGGATGTGTTTTCCGGG
CCAACACACCTGTCGGATAGCTCTACACTCATATTGGAAAACGTGGACAG
GCACCACGCAGGCACATATCAATGCTCAGCCGACAACGGGGTTAAAGATC
GCGTATCCATGGACATTCAGTTGACCATTCTCTCGCCCCCCGAAATAACG
GTAGAGAAATCTTGGGTCCACGCATCTGAGGGATACGATGTGGAGCTCGT
TTGCATAGTTCATGGAGATGTAAACTCAGAAATGCTGTGGTACCAGAACT
CATTTCTACTTGATGCTACCGATCGGAGATCTATGTATCCACGAGATGAT
AGGTACAGCCTGATTATCCGGAACTTCCAGCCAACGGATTTCGGAAATTA
TAGCTGTGTTGCGGATAATGCTTTGGGGAGAACAAAAAAGTATATTGAAG
TGTCTGGACGACCTGGTCCTGCTGACTTCATATCTCCCGCGTTGAGTGGA
TTCCTAGATCACTACAACTTGACGTGGACAATTGAGTCAATACCGCCGCT
TGATGAGATTAAGCTGTTGTATCGCCGTTTGTTGATGAATGAAACCTACC
AGCACCCTGGCAAATGGCACGAGTATCATATCAAGCCAACGCCAATCAGA
ACTGATGGATCCCACTTTCTAATGTCGTATCTCGTCAAAAACTTGGAACA
CAACGCTGTCTATGAAGCGATTGTTCAGGCTAAAAACAAATACGGATGGA
ACGAGATAAGCGATATCCACCAGTTCTACACGCGAAATCATGATCTACTC
CTAGATATCGACATGGAATACAAAATGGGCATTTCAAGCAATATTAGAAT
ATCTCCAACTGTCTCCGGAATAATTTTGTCTGCATTTATTTTAGTACTCT
ATCCCATCATTAGTGTTTAAAAGCTTTCTAGACCAT
BS27734.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:17:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7166-RC | 1404 | CG7166-PC | 1..1404 | 17..1420 | 7020 | 100 | Plus |
| CG7166-RB | 1404 | CG7166-PB | 1..1404 | 17..1420 | 7020 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:17:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7166-RC | 2073 | CG7166-RC | 175..1578 | 17..1420 | 7020 | 100 | Plus |
| CG7166-RB | 3466 | CG7166-RB | 175..1578 | 17..1420 | 7020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21623222..21623549 | 413..86 | 1640 | 100 | Minus |
| 3L | 28110227 | 3L | 21622346..21622648 | 1084..782 | 1515 | 100 | Minus |
| 3L | 28110227 | 3L | 21622891..21623161 | 683..413 | 1355 | 100 | Minus |
| 3L | 28110227 | 3L | 21622114..21622285 | 1255..1084 | 860 | 100 | Minus |
| 3L | 28110227 | 3L | 21621888..21622054 | 1420..1254 | 835 | 100 | Minus |
| 3L | 28110227 | 3L | 21622725..21622822 | 781..684 | 490 | 100 | Minus |
| 3L | 28110227 | 3L | 21623690..21623758 | 87..19 | 345 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:17:43 has no hits.
BS27734.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 18:42:46 Download gff for
BS27734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1576 | 17..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:06:52 Download gff for
BS27734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1576 | 17..1418 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:04 Download gff for
BS27734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7166-RB | 175..1576 | 17..1418 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:04 Download gff for
BS27734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21621890..21622052 | 1256..1418 | 100 | <- | Minus |
| 3L | 21622114..21622284 | 1085..1255 | 100 | <- | Minus |
| 3L | 21622346..21622648 | 782..1084 | 100 | <- | Minus |
| 3L | 21622725..21622822 | 684..781 | 100 | <- | Minus |
| 3L | 21622891..21623160 | 414..683 | 100 | <- | Minus |
| 3L | 21623222..21623548 | 87..413 | 100 | <- | Minus |
| 3L | 21623691..21623759 | 17..86 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:06:52 Download gff for
BS27734.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21614990..21615152 | 1256..1418 | 100 | <- | Minus |
| arm_3L | 21615214..21615384 | 1085..1255 | 100 | <- | Minus |
| arm_3L | 21615446..21615748 | 782..1084 | 100 | <- | Minus |
| arm_3L | 21615825..21615922 | 684..781 | 100 | <- | Minus |
| arm_3L | 21615991..21616260 | 414..683 | 100 | <- | Minus |
| arm_3L | 21616322..21616648 | 87..413 | 100 | <- | Minus |
| arm_3L | 21616791..21616859 | 17..86 | 98 | | Minus |
BS27734.pep Sequence
Translation from 16 to 1419
> BS27734.pep
MTTYTRKYWTLVLYLFSFSLSLIGGSFILPENDPPTTAPKFLSRGHLYKV
IVGETIELPCKVQNLGSFVLLWRKGSSVLTAGHLKITRDQRFKIVGDYNL
QINGVKTQDAGDYICQLGDQENRDQVHTVEILVPPTLRALPHNGQVTARK
GSTVTLECKASGNPVPTIFWFKKDVFSGPTHLSDSSTLILENVDRHHAGT
YQCSADNGVKDRVSMDIQLTILSPPEITVEKSWVHASEGYDVELVCIVHG
DVNSEMLWYQNSFLLDATDRRSMYPRDDRYSLIIRNFQPTDFGNYSCVAD
NALGRTKKYIEVSGRPGPADFISPALSGFLDHYNLTWTIESIPPLDEIKL
LYRRLLMNETYQHPGKWHEYHIKPTPIRTDGSHFLMSYLVKNLEHNAVYE
AIVQAKNKYGWNEISDIHQFYTRNHDLLLDIDMEYKMGISSNIRISPTVS
GIILSAFILVLYPIISV*
BS27734.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7166-PC | 467 | CG7166-PC | 1..467 | 1..467 | 2480 | 100 | Plus |
| CG7166-PB | 467 | CG7166-PB | 1..467 | 1..467 | 2480 | 100 | Plus |
| klg-PA | 545 | CG6669-PA | 99..484 | 37..420 | 1228 | 57.1 | Plus |
| CG34353-PB | 566 | CG34353-PB | 63..403 | 11..355 | 778 | 41.6 | Plus |
| CG34353-PA | 566 | CG34353-PA | 63..403 | 11..355 | 778 | 41.6 | Plus |
