BS27735.complete Sequence
1109 bp assembled on 2011-09-22
GenBank Submission: KX805092
> BS27735.complete
GAAGTTATCAGTCGACATGTTAGCGCTTTGCTGGCTTTGTGGCCTGGCCC
TTAGTTGTTGGATGGTTGGCATTCGTGGTGAGGTGGCTCTAAATCAGGAG
GATTACAACAAAACCTGGATCTACATGCCCAATGGACAGGGTAAGCCTGA
GGTGGCCTATCTGGTGGAACCTCCGCCCGAAAACCGCATCAATCTGCCAC
AGCTCATCAAGTTCGAGCTGTACGGAAGCGACTCCAGTTCCAGTGCTGAT
TTCTGGATAGATGAGAATAACTTTGAGTTTCCGCAGCGCCACAAGCGAGA
CACCTGGCAGGAGATGGCGGAGAAATTCAATCCGGAACTGGACACCAAGA
TACTCGTTCACGGCTGGAAGTCCAGCACCATGAGCAATTCGATTCAATCG
ATTCGTGGTGCCTATATCGAACGTGGCCAGGTGAACGTGTTCGCCATCAA
CTGGAAGGATCAGGCGGATAATATATACTATCTAACACCGGCGCGATATA
CGGTTCAGGTGGGACGGGCGGTGGCCAAGCTAATTGATCTGCTGGTGGAG
GAGAAGGATGCGGATCCGAATAGGATCCATCTGATTGGCCACAGTCTGGG
CGCGCACATCATGGGCTATGCTGGTTCGTACACTAAGTACAGGGTAAACC
GCATCACTGGCTTGGATCCAGCTCGTCCCGCTTTCGAGGATTGCATTGGT
CCGGAGAATCACTTGGACGACACGGACGCCAACTTTGTGGATGTCATACA
CAGCTGTGCCGGATACCTGGGCTTTCGCAAACCCATCGGCATGGTGGATT
TCTATCCCAATGGCGGTGGACCACCGCAACCAGGCTGCAAGGAGCTGTCG
CAGATTTTCACTGGTTGCAGTCATGGACGTTCATATGAATATTACGCGGA
GTCTATTAACTCGCCCAAAGGATTTTACGGTGTTCCCTGCTCTGGACTGG
ATGAACTCAAGGGAAAAAATTGCACCGGCGGCAAGATCCTAATGGGTGAT
CCAGTTCCTCGAGAAGCTCGCGGAATATTCTTTGTGAAGACGGCCAACAA
ACCGAGCTACGCCTTGGGTATCGATGATTTATGGAGTAATTGAAAGCTTT
CTAGACCAT
BS27735.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:28:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7367-RD | 1077 | CG7367-PD | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| CG7367-RB | 1077 | CG7367-PB | 1..1077 | 17..1093 | 5385 | 100 | Plus |
| CG7367-RC | 1170 | CG7367-PC | 143..1170 | 66..1093 | 5140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:28:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7367-RD | 1454 | CG7367-RD | 283..1359 | 17..1093 | 5385 | 100 | Plus |
| CG7367-RB | 1493 | CG7367-RB | 322..1398 | 17..1093 | 5385 | 100 | Plus |
| CG7367-RC | 1265 | CG7367-RC | 143..1170 | 66..1093 | 5140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:28:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8027308..8027941 | 860..227 | 3170 | 100 | Minus |
| 2L | 23513712 | 2L | 8027009..8027241 | 1093..861 | 1165 | 100 | Minus |
| 2L | 23513712 | 2L | 8028014..8028177 | 228..65 | 820 | 100 | Minus |
| 2L | 23513712 | 2L | 8028643..8028691 | 65..17 | 245 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:28:10 has no hits.
BS27735.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:03 Download gff for
BS27735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 327..1397 | 22..1092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:59:14 Download gff for
BS27735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 327..1397 | 22..1092 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:19:33 Download gff for
BS27735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7367-RB | 327..1397 | 22..1092 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:19:33 Download gff for
BS27735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8027010..8027241 | 861..1092 | 100 | <- | Minus |
| 2L | 8027308..8027939 | 229..860 | 100 | <- | Minus |
| 2L | 8028014..8028176 | 66..228 | 100 | <- | Minus |
| 2L | 8028643..8028686 | 22..65 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:59:14 Download gff for
BS27735.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8028014..8028176 | 66..228 | 100 | <- | Minus |
| arm_2L | 8028643..8028686 | 22..65 | 100 | | Minus |
| arm_2L | 8027010..8027241 | 861..1092 | 100 | <- | Minus |
| arm_2L | 8027308..8027939 | 229..860 | 100 | <- | Minus |
BS27735.pep Sequence
Translation from 16 to 1092
> BS27735.pep
MLALCWLCGLALSCWMVGIRGEVALNQEDYNKTWIYMPNGQGKPEVAYLV
EPPPENRINLPQLIKFELYGSDSSSSADFWIDENNFEFPQRHKRDTWQEM
AEKFNPELDTKILVHGWKSSTMSNSIQSIRGAYIERGQVNVFAINWKDQA
DNIYYLTPARYTVQVGRAVAKLIDLLVEEKDADPNRIHLIGHSLGAHIMG
YAGSYTKYRVNRITGLDPARPAFEDCIGPENHLDDTDANFVDVIHSCAGY
LGFRKPIGMVDFYPNGGGPPQPGCKELSQIFTGCSHGRSYEYYAESINSP
KGFYGVPCSGLDELKGKNCTGGKILMGDPVPREARGIFFVKTANKPSYAL
GIDDLWSN*
BS27735.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7367-PD | 358 | CG7367-PD | 1..358 | 1..358 | 1957 | 100 | Plus |
| CG7367-PB | 358 | CG7367-PB | 1..358 | 1..358 | 1957 | 100 | Plus |
| CG7367-PC | 389 | CG7367-PC | 47..389 | 16..358 | 1857 | 99.4 | Plus |
| CG6675-PC | 386 | CG6675-PC | 143..384 | 104..351 | 410 | 37.7 | Plus |
| CG6675-PB | 390 | CG6675-PB | 147..388 | 104..351 | 410 | 37.7 | Plus |
