BS27737.complete Sequence
1643 bp assembled on 2011-10-14
GenBank Submission: KX805418
> BS27737.complete
GAAGTTATCAGTCGACATGAGCTCTGTTGTATTGTTTGCAGTCTCATTTA
TTCTTGTTCTAAGCTGGATAGCTGAGGGCTACAGAGATCGCCAAAACTAT
GTAATTTCAGTGGAGGAGAAGATGGACCTGCTGGAGAAAGATAGAGAACT
CATTATCGTACTCGATAGTTATGCAACTGAGCTGAATGAAAAAATCATCA
TGTTGAAAAGAATAGTTAAGGAGTTTAAACAGCCTTTAGAAAAGGCTAAA
AACAGGGAGGAGGAGTACTTGTCCAATCCCATAGACAGCTTATCCCTCAT
GAGGCAGATGCACGAGGATTGGGAAAAGGTGGAGAAGCTCTTAAAGAAGC
CAGTGGGGCAAGAGAAAATTGCATTAGTCGAGAAAATGCGAGAGGATCTC
CCGGTGGAAAACGATCTGATGGAGGCCAATCAAGCCATGTTTCGTATACT
ACATACATATGATTTGGAGCCAAAGGATGTGTCTGCAGGCTGGATTGATG
GAGTTCAATATGGTGGTAAGATGTCTGCCAGTGATTGCTTTACCATGGGA
ACGTTCTCCTTCATGGCGGGTAGCTACCAAATTGCCTCCAAGTGGCTGAG
TGCAGCCAAGGATTTGTTGGTGGATCAACCACGTAAATACCATGAGGTGA
TGGGGATCACCAAGGCGGATGTTACATTGCTACTCGCTCGCTCTCTAATA
GCCAGTGGCAATGTATCCATCGCAACCGACATGCTGATGCGGGATTTCAT
GTTTGGTGAAGCTGGTAGTGCACTCACTGTACACTTTTTGAGGAACAAAC
CAAAGCCAAGTATTAACTTGGAGTCCTGGGAATCCGATGAATCCTTCAAT
CAACTCTGTCGATCCTCGAGCAGAAGACAGATGGGTGAATCCAAGCCCTC
GAGGCTTCACTGTCGCTATAATACCATTACTACGCCCTTCTTGAAACTAG
CCCCATTTCGAATGGAAGAACTTTCTTTGGATCCGTATGTGATTTTTTAT
CACAATGTTCTAAGTGATGCTGAGATTGAAAAGCTGAAGCCGATGGGCAA
GCCATTCCTGGAGCGTGCGAAAGTATTTCGAGTGGAAAAGGGCTCTGATG
AAATAGATCCCAGTAGATCAGCAGATGGCGCTTGGCTTCCTCACCAAAAC
ATCGATCCTGATGATCTGGAGGTTTTAAACCGCATTGGACGAAGAATCGA
AGACATGACGGGTCTAAATACTCGCAGTGGAAGCAAAATGCAGTTTCTCA
AGTATGGCTTCGGGGGTCATTTTGTGCCACATTACGACTATTTCAACTCG
AAAACCTTCTCTTTGGAGACGGTAGGCGATCGAATCGCCACGGTGCTCTT
TTATCTTAATAACGTGGACCATGGTGGAGCCACAGTTTTCCCCAAATTAA
ATCTTGCTGTGCCAACCCAAAAGGGTTCGGCATTGTTCTGGCACAATATA
GATAGAAAGTCCTACGACTACGATACACGCACTTTCCATGGCGCATGTCC
TCTGATATCTGGCACAAAGTTGGTAATGACACGCTGGATTTACGAGCTGG
ATCAAATGTTCCTTATTCCCGCAGTACTTCCTCCTCGCAGTCGAAACTTT
AGCAAATCACTTCCTAATCCATTCTAAAAGCTTTCTAGACCAT
BS27737.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:17:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31016-RC | 1611 | CG31016-PC | 1..1611 | 17..1627 | 8055 | 100 | Plus |
| CG31016-RB | 1611 | CG31016-PB | 1..1611 | 17..1627 | 8055 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:17:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31016-RC | 1633 | CG31016-RC | 7..1617 | 17..1627 | 8055 | 100 | Plus |
| CG31016-RB | 3923 | CG31016-RB | 7..1617 | 17..1627 | 8055 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:17:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30607102..30607749 | 707..1354 | 3240 | 100 | Plus |
| 3R | 32079331 | 3R | 30606853..30607048 | 513..708 | 980 | 100 | Plus |
| 3R | 32079331 | 3R | 30606195..30606388 | 17..210 | 970 | 100 | Plus |
| 3R | 32079331 | 3R | 30607812..30607980 | 1355..1523 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 30606436..30606589 | 209..362 | 770 | 100 | Plus |
| 3R | 32079331 | 3R | 30606641..30606793 | 361..513 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 30608046..30608150 | 1523..1627 | 525 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:17:15 has no hits.
BS27737.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:22 Download gff for
BS27737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 7..1615 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:56:56 Download gff for
BS27737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 7..1615 | 17..1625 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:15:35 Download gff for
BS27737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31016-RB | 7..1615 | 17..1625 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:15:35 Download gff for
BS27737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30606643..30606793 | 363..513 | 100 | -> | Plus |
| 3R | 30606854..30607047 | 514..707 | 100 | -> | Plus |
| 3R | 30606195..30606388 | 17..210 | 100 | -> | Plus |
| 3R | 30606438..30606589 | 211..362 | 100 | -> | Plus |
| 3R | 30607103..30607749 | 708..1354 | 100 | -> | Plus |
| 3R | 30607812..30607980 | 1355..1523 | 100 | -> | Plus |
| 3R | 30608047..30608148 | 1524..1625 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:56:56 Download gff for
BS27737.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26431917..26432110 | 17..210 | 100 | -> | Plus |
| arm_3R | 26432160..26432311 | 211..362 | 100 | -> | Plus |
| arm_3R | 26432365..26432515 | 363..513 | 100 | -> | Plus |
| arm_3R | 26432576..26432769 | 514..707 | 100 | -> | Plus |
| arm_3R | 26432825..26433471 | 708..1354 | 100 | -> | Plus |
| arm_3R | 26433534..26433702 | 1355..1523 | 100 | -> | Plus |
| arm_3R | 26433769..26433870 | 1524..1625 | 100 | | Plus |
BS27737.pep Sequence
Translation from 16 to 1626
> BS27737.pep
MSSVVLFAVSFILVLSWIAEGYRDRQNYVISVEEKMDLLEKDRELIIVLD
SYATELNEKIIMLKRIVKEFKQPLEKAKNREEEYLSNPIDSLSLMRQMHE
DWEKVEKLLKKPVGQEKIALVEKMREDLPVENDLMEANQAMFRILHTYDL
EPKDVSAGWIDGVQYGGKMSASDCFTMGTFSFMAGSYQIASKWLSAAKDL
LVDQPRKYHEVMGITKADVTLLLARSLIASGNVSIATDMLMRDFMFGEAG
SALTVHFLRNKPKPSINLESWESDESFNQLCRSSSRRQMGESKPSRLHCR
YNTITTPFLKLAPFRMEELSLDPYVIFYHNVLSDAEIEKLKPMGKPFLER
AKVFRVEKGSDEIDPSRSADGAWLPHQNIDPDDLEVLNRIGRRIEDMTGL
NTRSGSKMQFLKYGFGGHFVPHYDYFNSKTFSLETVGDRIATVLFYLNNV
DHGGATVFPKLNLAVPTQKGSALFWHNIDRKSYDYDTRTFHGACPLISGT
KLVMTRWIYELDQMFLIPAVLPPRSRNFSKSLPNPF*
BS27737.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:27:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31016-PC | 536 | CG31016-PC | 1..536 | 1..536 | 2788 | 100 | Plus |
| CG31016-PB | 536 | CG31016-PB | 1..536 | 1..536 | 2788 | 100 | Plus |
| PH4alphaNE3-PA | 481 | CG31017-PA | 11..481 | 22..512 | 906 | 37.5 | Plus |
| PH4alphaPV-PA | 525 | CG31015-PA | 12..521 | 5..520 | 774 | 34.3 | Plus |
| CG31013-PA | 534 | CG31013-PA | 11..534 | 12..531 | 722 | 33.8 | Plus |
