BS27739.complete Sequence
1208 bp assembled on 2011-09-27
GenBank Submission: KX800513
> BS27739.complete
GAAGTTATCAGTCGACATGTTACAATACCTGCTGGTTTGCTTCGTTCTAC
TCATCAGACGCCGCACCGACGGCAGCCTGTGTGCCACAAAGTTCATAGTG
CGCGTGCCTCGCGACAAGGACATTGGCTTGATCTTCGATCTGACCGTCAC
CAATCGCATCAGGAGTGACAAAAGGGAGACGCTGGACTTCAATGTCGTCT
CGAATGGGGAATGCACTGTGAACACGACCCATGGGGAGCAGGTGCACGCG
ATGGGAAGGATCTTTGGCGGGGATTTTGGCTCCGTCGAACCGGGCAAGAG
TGAAACTGTCTCCCTGGTCTGGCCCACTGTGTCTCTGTACAACCGTGTGG
GCAGCTGCCCCATTCTAATCTCAGCCACAAGTGCCCACGCTACGGATGCA
GTGGCAACCGCGAGGCAGGTGCTGCACTTTGACACCCGCTTTGAGACCCT
GGATCCGCACGGCAACAAGCTGCGCCGGCGGAAGGATTACAAGGACTGTC
GCAACTGGGACAAGGATTACCTGCGCAACTGCACACCGCTGAACTGTGAG
GAGCGTTACTTTGGGAAACGGAGCTTTTTCAATAGGGAAACGGAACAGTG
CGAACCGGTGACTGATTGCTCGGCCCCAGGCGAGTACTACGACATCTTCA
GCAACGAGCGCGTCGATCCTGGCAATTTCGTGTCCGAGGAGGAGCTGGAC
CTCATTAAGCAAGGAAAGTTCGACTTTAATTTTTTGGATTTGCGGGGGCC
ACCATCGCATGAGCCGAAAGCCAACAAAGCGCTTCCTTACAAGAAAAATA
CCAGGCCAACAAGGCACTTTGTCCATTCCAAGCATGAGAAGTCAGATGAT
TGCGACAATTTGCGTAAGCTAACCCTGGCCGATTTTAACGACTGCTTTCA
GCATTTGCAGGATGGTCAGTCCGAGCCGGTCGCAGTTGAACCCACAATCG
AGAAGAAAATCAAGAAAAAATCGCCATTTGAGGTGCCCATGCTAACGCAG
CTCTATTACGACTGGTATCTTCCTTTAAGGAGCGATAGCTGGGGGGAAGG
CGGAGAAATCGGTGCCATAGGTGATCCCAGTCCACAAAATGTCTCATCGG
GATCGGAACCCCTCATCACGTGGATCGGCAAGCTGGATTGGAAGGGCTGG
CTGTTCCTGATTCTCAGAGGAAGCTTTTTCGTGAGTTTGTGAAAGCTTTC
TAGACCAT
BS27739.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:19:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31279-RE | 1176 | CG31279-PE | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG31279-RC | 1176 | CG31279-PC | 1..1176 | 17..1192 | 5880 | 100 | Plus |
| CG31279-RD | 1338 | CG31279-PD | 1..1166 | 17..1182 | 5830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:19:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31279-RE | 1454 | CG31279-RE | 17..1192 | 17..1192 | 5880 | 100 | Plus |
| CG31279-RC | 1485 | CG31279-RC | 17..1192 | 17..1192 | 5880 | 100 | Plus |
| CG31279-RD | 1525 | CG31279-RD | 87..1252 | 17..1182 | 5830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:19:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16432117..16432552 | 757..1192 | 2180 | 100 | Plus |
| 3R | 32079331 | 3R | 16431281..16431707 | 331..757 | 2135 | 100 | Plus |
| 3R | 32079331 | 3R | 16430997..16431191 | 137..331 | 975 | 100 | Plus |
| 3R | 32079331 | 3R | 16430821..16430941 | 17..137 | 605 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:19:22 has no hits.
BS27739.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-27 18:42:47 Download gff for
BS27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 22..1191 | 22..1191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:07:10 Download gff for
BS27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 22..1191 | 22..1191 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:18:46 Download gff for
BS27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31279-RC | 22..1191 | 22..1191 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:18:46 Download gff for
BS27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16430826..16430941 | 22..137 | 100 | -> | Plus |
| 3R | 16430998..16431191 | 138..331 | 100 | -> | Plus |
| 3R | 16431282..16431707 | 332..757 | 100 | -> | Plus |
| 3R | 16432118..16432551 | 758..1191 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:07:10 Download gff for
BS27739.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12256548..12256663 | 22..137 | 100 | -> | Plus |
| arm_3R | 12256720..12256913 | 138..331 | 100 | -> | Plus |
| arm_3R | 12257004..12257429 | 332..757 | 100 | -> | Plus |
| arm_3R | 12257840..12258273 | 758..1191 | 100 | | Plus |
BS27739.pep Sequence
Translation from 16 to 1191
> BS27739.pep
MLQYLLVCFVLLIRRRTDGSLCATKFIVRVPRDKDIGLIFDLTVTNRIRS
DKRETLDFNVVSNGECTVNTTHGEQVHAMGRIFGGDFGSVEPGKSETVSL
VWPTVSLYNRVGSCPILISATSAHATDAVATARQVLHFDTRFETLDPHGN
KLRRRKDYKDCRNWDKDYLRNCTPLNCEERYFGKRSFFNRETEQCEPVTD
CSAPGEYYDIFSNERVDPGNFVSEEELDLIKQGKFDFNFLDLRGPPSHEP
KANKALPYKKNTRPTRHFVHSKHEKSDDCDNLRKLTLADFNDCFQHLQDG
QSEPVAVEPTIEKKIKKKSPFEVPMLTQLYYDWYLPLRSDSWGEGGEIGA
IGDPSPQNVSSGSEPLITWIGKLDWKGWLFLILRGSFFVSL*
BS27739.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:21:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31279-PE | 391 | CG31279-PE | 1..391 | 1..391 | 2115 | 100 | Plus |
| CG31279-PC | 391 | CG31279-PC | 1..391 | 1..391 | 2115 | 100 | Plus |
| CG31279-PD | 445 | CG31279-PD | 1..389 | 1..389 | 2107 | 100 | Plus |
| CG31279-PB | 454 | CG31279-PB | 1..392 | 1..391 | 2096 | 99.2 | Plus |
| CG31279-PF | 67 | CG31279-PF | 1..67 | 325..391 | 370 | 100 | Plus |
