BS27741.complete Sequence
1274 bp assembled on 2011-09-22
GenBank Submission: KX804307
> BS27741.complete
GAAGTTATCAGTCGACATGTTTGACCAACCCCCTGAAAACGAACTGCAGA
AATCACATGACCACAATCCAGGCGCACTAAGCGAGCATCAACTGCGTGTC
CAAGCTTCGCTTCAGCGGCTAAATATTCCCGACTGGTTCCGTCATTACAA
CAAAGGCCCCGAAAAGGCAGCAGATGGCGAAAACGCATGCACAAGTGCGA
CTGGCGGTGGTTACCGACCTGGCAACTTCACCCGCAAACGCGCACAGGAA
TCGGGTCGCTGGCAAGGGCTCAACTCAAAGACGACTTCCCTCAGCTCGCT
GGGATCTCAACGCTCCGACCGAAGTCCTTTGTTGATGAGTCCCTCAGCGC
ACAGTCATCACGGCGGCCAAAGCTCCTATTCATGTGGGTCGACGACAATT
CACGGTCCGGCACCTGTACAGATAGGCATGGGTGCAACTCGCTGGTCAAC
CTCTCATCTGAATTCCACTCAGATGTCTCCCGGTGCCTCGCAGCGCGGAA
GCTTTACGCGCGGCGCCCCCATTAATAGCAGCTTTATATCTGTGGCCAGT
GGTAGTGGCTTGTTGCGCAATTCCTACCGACAGCCGTATTTGGGTTGGCG
CAGCACAGAGAAGCTCTCCCAACGAACTCCCCACGAACGTCTGGCCAATT
CGCTGCTAACCCAACGGACAGCTCCGCCCTCCACACGGGCGGGCAATGAA
ACCCGCACCTTACATTCTGTATCGACAGAGATTCAAAGCTCCATTAAGGA
AGTCACATCCGCCATCGTTCACTTCGTGAACGACCAGCAGCAGTCCCAAC
ATCCGCGGAGCCGTTCTACCAGTCCAAATTCAAGGTGCTGGCTGGAAAGC
AGCTTTGTTGGTACACGAACCCTGGACTCGCCGCAAACACCCGTCATTGA
CAACAGTCCTCCCGAATTGGCACGAAAGCAGCAGCAGCTCCACCCGCACC
AAGTGCATCTGGATGTCGGTCTGTCGCCTGTAGTCTCCGCTGGTCAGCTG
CCACATCGCATGAACGGAATAAATCGTATCGGCAACGGTGGCGCACCCGA
ACGATCGTTAAGCAGCGCCTCGCTAGAAGATGTCCTAGCCTCGCTATTAG
GACTACCAACTACCCTTTTATCCGGCCAGAACAGCAATTCCTACAGCAGC
TACACTCCCAATGCGGCGACAACAGGTATGAACCTCATGCGCAGCTTCTC
GGCAGCAGCTGGAGGTGCAATCAGCCGCCGAACTGCAGCGGCTTCGTCGC
CGGAGTGAAAGCTTTCTAGACCAT
BS27741.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42748-RF | 1242 | CG42748-PF | 1..1242 | 17..1258 | 6210 | 100 | Plus |
| CG42748-RL | 2469 | CG42748-PL | 1..1233 | 17..1259 | 6030 | 99.2 | Plus |
| CG42748-RK | 6573 | CG42748-PK | 4099..5337 | 29..1259 | 5755 | 97.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42748-RF | 4450 | CG42748-RF | 120..1363 | 16..1259 | 6220 | 100 | Plus |
| CG42748-RL | 5823 | CG42748-RL | 120..1353 | 16..1259 | 6035 | 99.2 | Plus |
| CG42748-RK | 9304 | CG42748-RK | 4979..6217 | 29..1259 | 5755 | 97.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 22154798..22155408 | 29..639 | 3055 | 100 | Plus |
| 2L | 23513712 | 2L | 22158511..22158721 | 833..1043 | 1055 | 100 | Plus |
| 2L | 23513712 | 2L | 22156620..22156817 | 639..836 | 990 | 100 | Plus |
| 2L | 23513712 | 2L | 22160207..22160349 | 1043..1185 | 715 | 100 | Plus |
| 2L | 23513712 | 2L | 22161678..22161751 | 1186..1259 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:38:19 has no hits.
BS27741.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:10 Download gff for
BS27741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RF | 127..1361 | 23..1257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:50 Download gff for
BS27741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RF | 127..1361 | 23..1257 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:46 Download gff for
BS27741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42748-RF | 127..1361 | 23..1257 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:46 Download gff for
BS27741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 22161678..22161749 | 1186..1257 | 100 | | Plus |
| 2L | 22154792..22155408 | 23..639 | 99 | -> | Plus |
| 2L | 22156621..22156815 | 640..834 | 100 | -> | Plus |
| 2L | 22158513..22158721 | 835..1043 | 100 | -> | Plus |
| 2L | 22160208..22160349 | 1044..1185 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:50 Download gff for
BS27741.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 22154792..22155408 | 23..639 | 99 | -> | Plus |
| arm_2L | 22156621..22156815 | 640..834 | 100 | -> | Plus |
| arm_2L | 22160208..22160349 | 1044..1185 | 100 | -> | Plus |
| arm_2L | 22161678..22161749 | 1186..1257 | 100 | | Plus |
| arm_2L | 22158513..22158721 | 835..1043 | 100 | -> | Plus |
BS27741.pep Sequence
Translation from 16 to 1257
> BS27741.pep
MFDQPPENELQKSHDHNPGALSEHQLRVQASLQRLNIPDWFRHYNKGPEK
AADGENACTSATGGGYRPGNFTRKRAQESGRWQGLNSKTTSLSSLGSQRS
DRSPLLMSPSAHSHHGGQSSYSCGSTTIHGPAPVQIGMGATRWSTSHLNS
TQMSPGASQRGSFTRGAPINSSFISVASGSGLLRNSYRQPYLGWRSTEKL
SQRTPHERLANSLLTQRTAPPSTRAGNETRTLHSVSTEIQSSIKEVTSAI
VHFVNDQQQSQHPRSRSTSPNSRCWLESSFVGTRTLDSPQTPVIDNSPPE
LARKQQQLHPHQVHLDVGLSPVVSAGQLPHRMNGINRIGNGGAPERSLSS
ASLEDVLASLLGLPTTLLSGQNSNSYSSYTPNAATTGMNLMRSFSAAAGG
AISRRTAAASSPE*
BS27741.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42748-PF | 413 | CG42748-PF | 1..413 | 1..413 | 2147 | 100 | Plus |
| CG42748-PL | 822 | CG42748-PL | 1..386 | 1..386 | 2019 | 100 | Plus |
| CG42748-PK | 2190 | CG42748-PK | 1367..1754 | 5..386 | 1980 | 98.5 | Plus |
| CG42748-PH | 778 | CG42748-PH | 1..343 | 1..343 | 1811 | 100 | Plus |
| CG42748-PE | 349 | CG6448-PF | 1..342 | 1..342 | 1807 | 100 | Plus |
