BS27749.complete Sequence
1961 bp assembled on 2011-10-14
GenBank Submission: KX800316
> BS27749.complete
GAAGTTATCAGTCGACATGGCAGCTGCTGTCTTGGAAATTAACGAAAACC
AATTGGAGCTGGTTTGCGATGAATGCGATTATTACGGCGCCACAGACACC
ATATTTATTGATAATAGTACCCAAACCGATGGCTATGATGATGACGAGTC
TGAGCTAAAGCCTTTGAAACCCAGACTGAGTCAGATTGTGGAAGAGGAAG
CGGAAATGGAAGGGACAGTCAAAGAGGAAATGGACACGCAAGTGGAAACA
AACGGTATACAAAGCGATAGCAATGGCGTTAGTGATGTGAAAACCGCGAT
TAATGGCAATGAATCGATCGTGGCGGAGGAGATCTCTGAGGAGGAGCCTC
CAGTTGAAGCGAGTGTACCACATGTTGTCCAGGAACTAGTCGATTCCGAT
GATGAGGTGGAAATCGACGACGTGACCAGGCTAGCAGGCTTGACTTTGGG
CATGGGCTATGCTCGCATTATAGACTACGATAACTTGCGCATTATCGAGC
ATGTTATCGAAAGCGACGATGAGGACGATAACAATGTTGCAGCAGCTGGT
ACAGCGGCAACATCAGCGGAATTGCAGCAGGCCTGCCATGATTTGGTGAC
TTTCATCGGTGAAAGCTATCAGGTAATCGAGAGGTCAGGTCATAGTCGTG
AACCCACCGCAACTTTGTCGGTGGTGGACAACAACAATAATAATCGAAGT
AGCGAAGTATCCACAAACGGTCGTGGCGCCATCACCGATAGATCAAAATC
AACCCGGAAAGTGCACAACGGGTTGCAAGTAAATCAAAACGCATCCACTA
GTGCAACAGCAACCAGCAGCAGCAACAGCAAAAGCAACAGCAGCAACAAC
ACTGCTGCAACATCTAACAGCAGTGCGTTGATAAAGGCTTACAAATCGAA
TCTTACCCCCTTGGCGCCGCCCTTTCAGCCCGCCGCCTTGAAGGCCAAGC
AGCTGCAACAATCGTCGCTGCCCAGCGGCAACATGTCCTCGGTGACGACG
ACAACAACCACAGCTTTGGGCTATACCGCCTATGAGCAGACAACGGTCTA
CTATCAGCAGCAAGTTCAACAGCAGCAGCAGCAACACCCACAACAGCAGC
AACAGTTGTCACCCAAGCAGCAGCAGCAGCAGCAGCAGCAGCCGCAGCAA
CAGCAGCCAATCTGCGCTCAACATGGAGGCTTGCCGCATATTCATGGCGC
CCAACTGCTGCCCGTGCAGTTGATAGCCCTGCCACCGAATGGAGTAACAG
CAGCAGCTGCAACAGCAGCAGTAGCAGCAGCAGCAGGAGCAACTGTGGCA
GCGGCCGGAACTCCAGCAGCCGCAGCAGCGGGTGGTGCCGCAGCAACATC
TTTGACTGGCGCCGCTTGGCCACTTGTGGAGGCGCCAATTTACATCGACA
TCAATGGCGAATATCGCAGCTATTGCCCGGCACATGGACCACCGGCCGTG
GCAGTCCCAAATGGCGCCATCGGCCATCATCCCCACATTCATGCCCATCC
TCCGCACACCCATTCGCATGCCCATCCTACACATTCGCATCACGCACAGC
AGCAACAGCAACAGCAGCAGCAGCAGCAGCAGCAGCTTCATCATCACCAT
CAGCAACATGGGCAGCATCAGCAACATTTGACGCCATCGCCAGTGACAAA
TGTTAATGGAAATATAGCACAGGCAGCAGCAGCAGCAGCTTCAGCGCCTA
GATTGCTGCTGCAACTGGACGCAGCAACTGTCCAGCAGCAACAGCAACAG
CAGCATCAGCAGCAACAACAGCATCAGCAGCAACAGCAGCAACAAATCGT
GGCCGCTGGCAAGCGTAGCAAAGTTTATCGAGGTGAGTGCACATGGTTCT
GTATCTTCATTCAATACATTGTAATAGATGATGATCTAACGGTTATTTGG
CCTTTGACAAATTCATATGATAATGCCATATGCGATTTAAATTGAAAGCT
TTCTAGACCAT
BS27749.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:20:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42389-RE | 6195 | CG42389-PE | 1..1818 | 17..1834 | 9090 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42389-RE | 7102 | CG42389-RE | 674..2491 | 17..1834 | 9090 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16558129..16559951 | 17..1839 | 9115 | 100 | Plus |
| 2L | 23513712 | 2L | 16597209..16597324 | 1831..1946 | 580 | 100 | Plus |
Blast to na_te.dros performed 2014-11-26 16:20:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2996 | 973..1649 | 361 | 56.3 | Plus |
BS27749.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:27 Download gff for
BS27749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RD | 657..2584 | 17..1944 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:28 Download gff for
BS27749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RE | 674..2496 | 17..1840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:53 Download gff for
BS27749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42389-RE | 674..2496 | 17..1840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:53 Download gff for
BS27749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16558129..16559944 | 17..1832 | 100 | -> | Plus |
| 2L | 16597211..16597322 | 1833..1944 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:28 Download gff for
BS27749.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16558129..16559944 | 17..1832 | 100 | -> | Plus |
| arm_2L | 16597211..16597322 | 1833..1944 | 100 | | Plus |
BS27749.pep Sequence
Translation from 16 to 1944
> BS27749.pep
MAAAVLEINENQLELVCDECDYYGATDTIFIDNSTQTDGYDDDESELKPL
KPRLSQIVEEEAEMEGTVKEEMDTQVETNGIQSDSNGVSDVKTAINGNES
IVAEEISEEEPPVEASVPHVVQELVDSDDEVEIDDVTRLAGLTLGMGYAR
IIDYDNLRIIEHVIESDDEDDNNVAAAGTAATSAELQQACHDLVTFIGES
YQVIERSGHSREPTATLSVVDNNNNNRSSEVSTNGRGAITDRSKSTRKVH
NGLQVNQNASTSATATSSSNSKSNSSNNTAATSNSSALIKAYKSNLTPLA
PPFQPAALKAKQLQQSSLPSGNMSSVTTTTTTALGYTAYEQTTVYYQQQV
QQQQQQHPQQQQQLSPKQQQQQQQQPQQQQPICAQHGGLPHIHGAQLLPV
QLIALPPNGVTAAAATAAVAAAAGATVAAAGTPAAAAAGGAAATSLTGAA
WPLVEAPIYIDINGEYRSYCPAHGPPAVAVPNGAIGHHPHIHAHPPHTHS
HAHPTHSHHAQQQQQQQQQQQQQLHHHHQQHGQHQQHLTPSPVTNVNGNI
AQAAAAAASAPRLLLQLDAATVQQQQQQQHQQQQQHQQQQQQQIVAAGKR
SKVYRGECTWFCIFIQYIVIDDDLTVIWPLTNSYDNAICDLN*
BS27749.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42389-PE | 2064 | CG42389-PE | 1..606 | 1..606 | 3112 | 100 | Plus |
| pros-PK | 1535 | CG17228-PK | 869..1209 | 271..592 | 239 | 30.9 | Plus |
| pros-PI | 1835 | CG17228-PI | 1169..1509 | 271..592 | 239 | 30.9 | Plus |
| ovo-PC | 1222 | CG6824-PC | 775..1054 | 304..560 | 236 | 31.7 | Plus |
| ovo-PE | 1351 | CG6824-PE | 904..1183 | 304..560 | 236 | 31.7 | Plus |
| ovo-PC | 1222 | CG6824-PC | 713..815 | 506..604 | 174 | 43.3 | Plus |
