BS27752.complete Sequence
2459 bp assembled on 2012-04-25
GenBank Submission: KX801759
> BS27752.complete
GAAGTTATCAGTCGACATGCCTGATATGATGCCAATGGCTAATTCATTCA
ATCCACTCATTAACATAAATCAGGAAGCGGGTGTGGTAATTAACACAGGA
ATAAATTCAATAGACAATGGACTACCAAGTACATACAGTGAACACATATC
TCAGCCAACTAATACAGAATCTACAAGGAATATGAATTCTTCAATTTTTG
ATATTCCCAGCGATCTAGACAATAATTCTTCAAATGAGTCTGGCGATGAA
GTAACTCAGCCCACTGCTAAACAATCTAAAATAAATGCGAATTTTGTTTG
TAAAATAGAAAGCGATACAAACATGGATAAATTACCAACTACGTCCAATA
ATACAAACGACAAGCCGCCAAATAACACAGATTCTGATTCGGATATTATT
TCAATTTCTGATTTAATTGAAGATTTAAATTTGGATTTTAATCAACTACC
GATTACCTCTTGTGACGTAGAAACCCATCCAGCAGACACACAATCTAATA
TCGATGCTAATTTGCCATATGATTTGATAAGTGCCATAAATATGGACTTT
GTCAATCCAGCTAACAGAACATATATGTCAGCTGCCAATTCAACACGAGG
AACCGCCTACAAGATTAGAAAGCCCCGGACGGTCAAGAGAATCATTAAGG
CGCCATCAAAGTCCAACATTGGAAAGTTGTTGAGGGAAGCTGCCAAGAAG
GAAAATGCGGCTGCGGGAACGCAGAGACCGAAGAAGGCCACGTCGACGAT
AACATCTTCAGTTCAAAACTTTCCAAATCCCAATAATTGGCCTGCATGCC
CATTTCCGATGCAGAACGGCACTATGCCAGCAGATGAACCCAATGACTTA
ATGCCAACGGTTTCGCAAAGTCTAACAGTGCCAGCTGCTCAAAATCGTCC
AATACAAACAATCGGAAAGATTATTAAGCCTCCTGTCAAGCGGACTTACA
CGAAGAGAGCCAATAAGACCAATAATACAAATATACCAAATAAAAATAGT
ACTGGGGTCATACAGTCTAATGGAGTGGCACCTACAATACGACAAGGACT
TGTAGAGCCCGGCGGAACTAATATTCTGATGCCATGGAATAGGCAGATAC
CAATGGTGTCTGTTGCTGAAAATCCACGAGTACAAACAATCGATAAAATA
ATTGTGCCTCCACCCAAGCGTACTTACAAGAAGAGAGTCAATAAGACCGT
GAATACAAATCAGTCCTCCGAGAGTGCTGTAGGTGATGGTGCTCCGAGTG
CACCTATACAATCGATCCCCAAGGTTAGGAAGCCCAGAGGTCCTGGAAAA
AAAACTGCTAAGATGGTACCCGGTCAGGAATCTCAACAGGATATACCTTT
AGGAGTTCCGCCAAATGGAGAAGCTCCTCAAACCTCTTCCCAGGCACCTG
TGCCTCGTGTCAAGCGGGCTTACAGGAAGAGAGCCAATAATACCAATAAT
ACAAATATACTTAATGTAAATAGTACCGGGGTCATGGAGTCTAATGGAGG
AGGACCTACAATACCAAATAGTCAGCAGATTCCAAACGTTGCTGTTGTTC
TGAATTTACCTATACAACCGATCAAGCCCAAGGCTCCCAGAAAACCACGT
GCTAAAAAAGTGTGCAACCAGCAACCGGGGACAGATATACCCTTTGGGGT
ATCGGCACAAGGACAAACGGCTCAAATCAAGCCGAAGCCTAAGCCAAGAG
CTCCTAGGGTGCCCAAGGAACCTAAGGCGCCCAAGGAACCTAAGGCGCCC
AAAGTACCGAAGGCACCAAGAGTACCGAAGGCACCAAGAGTACCGAAGGC
ACCAAGAGTACCGAAGGCACCAAGAGTACCAAAGCCACCTAAGGAACCAA
AGCCACCTAAGGAACCAAAGCCACCTAAACAACCAAAGGCACCTAGGGTA
CCGAAGGAGCCGAAGCCGCCAAAGGTACCCAAGGAACCTAAAGCGCCTAG
GGCACCCAGGGCACCCAGGGTACCAAAAGCTCCAAAGGAACCAAAAGTAC
CCAAGATTCCGAAGAACCCCAGGGTACCGAAAGCACCAAGGCAACCGAAA
GCGTCAATGAATAAAATACAGAACACCGTAAAGGTACCGCTACCCATTGA
GCCCGTACCTCTAGAAACACCCACTTACATAAATCCTATTAATACGCCTG
TACAATCAACCGTTGGCGAGATACTCGCACTAGGGTCGATGCCACCCATA
TCGCCAATTAAGTTCCCAGTACTATTTGACGAACATGCTGCTCAGCATAC
CGTAGCAAACTCCAATATGCCACAATCTTCTTTGCCAACGCTAGACATTC
CACAACTTCCAACAAGGAACAACAAACAGCCATCGACGAAGAGCGCAGAA
GACACAGAAATATTAGGACTTGGCAAAAACAAAAACGCTATGGTATATAT
TATATTCATATTTATCATCATGTTTATTTATTTATTTAAGTAAAAGCTTT
CTAGACCAT
BS27752.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 11:59:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2861-RC | 2427 | CG2861-PC | 1..2427 | 17..2443 | 12135 | 100 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 292..2667 | 17..2392 | 11880 | 100 | Plus |
| CG2861-RD | 5622 | CG2861-PD | 292..2667 | 17..2392 | 11880 | 100 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1687..1928 | 1739..1980 | 370 | 76.9 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1723..1964 | 1703..1944 | 370 | 76.9 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 1978..2219 | 1739..1980 | 370 | 76.9 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 2014..2255 | 1703..1944 | 370 | 76.9 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 912..1024 | 1402..1514 | 355 | 87.6 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1386..1498 | 928..1040 | 355 | 87.6 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 1203..1315 | 1402..1514 | 355 | 87.6 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 1677..1789 | 928..1040 | 355 | 87.6 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1722..1981 | 1792..2051 | 205 | 71.9 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1776..2035 | 1738..1997 | 205 | 71.9 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 2013..2272 | 1792..2051 | 205 | 71.9 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 2067..2326 | 1738..1997 | 205 | 71.9 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 870..966 | 1114..1210 | 185 | 79.4 | Plus |
| CG2861-RC | 2427 | CG2861-PC | 1098..1194 | 886..982 | 185 | 79.4 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 1161..1257 | 1114..1210 | 185 | 79.4 | Plus |
| CG2861-RE | 5622 | CG2861-PE | 1389..1485 | 886..982 | 185 | 79.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 11:59:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2861-RC | 2875 | CG2861-RC | 376..2802 | 17..2443 | 12135 | 100 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 507..2882 | 17..2392 | 11880 | 100 | Plus |
| CG2861-RD | 5932 | CG2861-RD | 507..2882 | 17..2392 | 11880 | 100 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 2062..2303 | 1739..1980 | 370 | 76.9 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 2098..2339 | 1703..1944 | 370 | 76.9 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 2193..2434 | 1739..1980 | 370 | 76.9 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 2229..2470 | 1703..1944 | 370 | 76.9 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 1287..1399 | 1402..1514 | 355 | 87.6 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 1761..1873 | 928..1040 | 355 | 87.6 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 1418..1530 | 1402..1514 | 355 | 87.6 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 1892..2004 | 928..1040 | 355 | 87.6 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 2097..2356 | 1792..2051 | 205 | 71.9 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 2151..2410 | 1738..1997 | 205 | 71.9 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 2228..2487 | 1792..2051 | 205 | 71.9 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 2282..2541 | 1738..1997 | 205 | 71.9 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 1245..1341 | 1114..1210 | 185 | 79.4 | Plus |
| CG2861-RC | 2875 | CG2861-RC | 1473..1569 | 886..982 | 185 | 79.4 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 1376..1472 | 1114..1210 | 185 | 79.4 | Plus |
| CG2861-RE | 5967 | CG2861-RE | 1604..1700 | 886..982 | 185 | 79.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 11:59:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 4800908..4803334 | 2443..17 | 12135 | 100 | Minus |
| X | 23542271 | X | 4801371..4801612 | 1944..1703 | 370 | 76.9 | Minus |
| X | 23542271 | X | 4801407..4801648 | 1980..1739 | 370 | 76.9 | Minus |
| X | 23542271 | X | 4801837..4801949 | 1040..928 | 355 | 87.6 | Minus |
| X | 23542271 | X | 4802311..4802423 | 1514..1402 | 355 | 87.6 | Minus |
| X | 23542271 | X | 4801300..4801559 | 1997..1738 | 205 | 71.9 | Minus |
| X | 23542271 | X | 4801354..4801613 | 2051..1792 | 205 | 71.9 | Minus |
| X | 23542271 | X | 4802141..4802237 | 982..886 | 185 | 79.4 | Minus |
| X | 23542271 | X | 4802369..4802465 | 1210..1114 | 185 | 79.4 | Minus |
Blast to na_te.dros performed 2014-11-28 11:59:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| BS3 | 1790 | BS3 BS3 1790bp | 1638..1721 | 1002..921 | 135 | 68.6 | Minus |
BS27752.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-25 15:17:00 Download gff for
BS27752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 376..2800 | 17..2441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:33 Download gff for
BS27752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 376..2800 | 17..2441 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 12:54:55 Download gff for
BS27752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2861-RC | 376..2800 | 17..2441 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 12:54:55 Download gff for
BS27752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 4800910..4803334 | 17..2441 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:33 Download gff for
BS27752.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 4694943..4697367 | 17..2441 | 100 | | Minus |
BS27752.pep Sequence
Translation from 16 to 2442
> BS27752.pep
MPDMMPMANSFNPLININQEAGVVINTGINSIDNGLPSTYSEHISQPTNT
ESTRNMNSSIFDIPSDLDNNSSNESGDEVTQPTAKQSKINANFVCKIESD
TNMDKLPTTSNNTNDKPPNNTDSDSDIISISDLIEDLNLDFNQLPITSCD
VETHPADTQSNIDANLPYDLISAINMDFVNPANRTYMSAANSTRGTAYKI
RKPRTVKRIIKAPSKSNIGKLLREAAKKENAAAGTQRPKKATSTITSSVQ
NFPNPNNWPACPFPMQNGTMPADEPNDLMPTVSQSLTVPAAQNRPIQTIG
KIIKPPVKRTYTKRANKTNNTNIPNKNSTGVIQSNGVAPTIRQGLVEPGG
TNILMPWNRQIPMVSVAENPRVQTIDKIIVPPPKRTYKKRVNKTVNTNQS
SESAVGDGAPSAPIQSIPKVRKPRGPGKKTAKMVPGQESQQDIPLGVPPN
GEAPQTSSQAPVPRVKRAYRKRANNTNNTNILNVNSTGVMESNGGGPTIP
NSQQIPNVAVVLNLPIQPIKPKAPRKPRAKKVCNQQPGTDIPFGVSAQGQ
TAQIKPKPKPRAPRVPKEPKAPKEPKAPKVPKAPRVPKAPRVPKAPRVPK
APRVPKPPKEPKPPKEPKPPKQPKAPRVPKEPKPPKVPKEPKAPRAPRAP
RVPKAPKEPKVPKIPKNPRVPKAPRQPKASMNKIQNTVKVPLPIEPVPLE
TPTYINPINTPVQSTVGEILALGSMPPISPIKFPVLFDEHAAQHTVANSN
MPQSSLPTLDIPQLPTRNNKQPSTKSAEDTEILGLGKNKNAMVYIIFIFI
IMFIYLFK*
BS27752.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:23:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2861-PC | 808 | CG2861-PC | 1..808 | 1..808 | 4237 | 100 | Plus |
| CG2861-PE | 1873 | CG2861-PE | 98..889 | 1..792 | 4157 | 100 | Plus |
| CG2861-PD | 1873 | CG2861-PD | 98..889 | 1..792 | 4157 | 100 | Plus |
| CG2861-PA | 1893 | CG2861-PA | 98..889 | 1..792 | 4157 | 100 | Plus |
| CG12723-PA | 625 | CG12723-PA | 269..505 | 497..730 | 277 | 31.5 | Plus |
