BS27756.complete Sequence
3323 bp assembled on 2011-10-14
GenBank Submission: KX805161
> BS27756.complete
GAAGTTATCAGTCGACATGAACTCGGCGGTGGATGCGTGGGCTGTGACCC
CGAGGGAGCGTTTGAAGTACCAGGAACAGTTTAGGGCACTCCAGCCGCAG
GCAGGATTCGTTACCGGCGCCCAGGCCAAAGGGTTCTTCCTGCAGTCCCA
GCTGCCGCCCCTGATCCTTGGCCAAATATGGGCTCTGGCGGACACTGATT
CCGACGGCAAGATGAACATCAATGAGTTCAGCATAGCCTGCAAGCTTATC
AACCTCAAGTTGCGCGGCATGGACGTTCCCAAGGTTCTTCCTCCCAGCCT
GCTGTCGTCTCTTACCGGCGATGTCCCCTCGATGACGCCACGTGGCTCCA
CAAGCTCCTTGAGCCCTTTGGATCCACTCAAGGGAATAGTTCCGGCAGTA
GCTCCAGTTGTTCCCGTTGTGGCTCCACCGGTGGCTGTGGCTACTGTCAT
TTCACCGCCTGGAGTCTCAGTGCCGTCTGGCCCCACACCCCCCACCAGCA
ATCCACCTAGTCGCCACACGTCTATCTCAGAGCGAGCGCCATCGATCGAG
TCTGTCAACCAAGGAGAATGGGCCGTTCAAGCTGCCCAAAAGCGTAAATA
CACGCAGGTGTTCAATGCTAATGATCGCACCCGATCTGGTTACTTAACTG
GATCCCAGGCACGCGGCGTTCTCGTACAGAGCAAGTTACCCCAGGTCACG
CTGGCCCAAATCTGGACGCTGTCCGACATCGACGGCGATGGACGGCTGAA
CTGCGACGAGTTTATTCTTGCCATGTTCCTATGCGAGAAGGCCATGGCTG
GTGAGAAAATTCCGGTTACCTTGCCCCAGGAATGGGTACCGCCCAACTTG
CGCAAAATAAAATCGCGACCGGGATCGGTCTCAGGGGTGGTATCCCGTCC
TGGCTCACAGCCGGCCTCCCGACACGCATCTGTTTCATCCCAAAGCGGAG
TGGGAGTCGTGGATGCTGACCCAACAGCCGGACTACCTGGACAAACTTCC
TTCGAAGACAAGCGAAAGGAGAATTATGTTAAGGGTCAAGCAGAGCTGGA
TCGTAGGCGCAAAATTATGGAGGACCAGCAGCGCAAGGAGCGGGAAGAGA
GAGAGCGAAAGGAGCGTGAAGAGGCTGATAAGCGTGAAAAGGCTCGTTTG
GAGGCCGAGCGTAAGCAGCAGGAGGAACTAGAGCGACAGCTCCAACGCCA
GCGAGAGATTGAGATGGAGAAGGAGGAGCAGCGCAAGAGGGAACTGGAGG
CTAAGGAGGCGGCCAGAAAGGAGCTTGAGAAGCAGCGCCAGCAGGAATGG
GAGCAGGCTAGAATTGCCGAAATGAACGCACAGAAGGAGAGGGAACAAGA
ACGTGTTCTAAAGCAGAAGGCACACAACACCCAGCTTAATGTGGAGCTCA
GCACACTGAATGAAAAAATCAAGGAGCTTTCGCAGAGGATTTGCGACACT
CGTGCCGGCGTGACAAACGTAAAGACCGTTATCGACGGAATGCGCACCCA
GCGCGACACTTCCATGTCCGAAATGTCGCAGCTGAAAGCGCGGATTAAGG
AGCAGAACGCTAAACTGCTTCAGCTCACCCAAGAGAGGGCCAAGTGGGAG
GCCAAGAGCAAGGCCAGCGGGGCTGCCTTGGGAGGGGAGAATGCGCAGCA
GGAGCAACTGAATGCCGCATTCGCCCACAAGCAGTTAATTATTAACCAAA
TAAAGGATAAAGTCGAGAATATCAGTAAAGAGATTGAGTCAAAGAAGGAG
GACATCAACACTAATGATGTACAGATGTCTGAGCTCAAGGCCGAGCTCTC
CGCTCTAATCACAAAGTGCGAGGATCTGTACAAGGAATACGATGTGCAGC
GCACCTCGGTGCTGGAATTGAAGTACAATCGAAAGAACGAAACTAGTGTA
TCGTCGGCCTGGGACACAGGCTCTTCCAGTGCTTGGGAGGAGACGGGTAC
GACTGTCACCGATCCCTACGCAGTTGCGAGCAATGATATCTCCGCACTGG
CCGCTCCAGCTGTGGACTTAGGGGGACCGGCCCCAGAAGGATTCGTGAAA
TATCAAGCAGTATACGAGTTCAACGCACGCAACGCGGAGGAGATTACCTT
TGTGCCTGGTGACATTATCCTGGTGCCATTGGAGCAGAACGCCGAGCCGG
GATGGTTGGCTGGCGAAATAAATGGCCACACCGGCTGGTTCCCTGAATCC
TATGTGGAGAAACTAGAAGTCGGTGAAGTTGCTCCTGTCGCCGCTGTCGA
AGCCCCGGTTGATGCTCAAGTGGCCACCGTGGCTGACACCTACAATGACA
ATATCAATACCAGCTCGATTCCGGCAGCTTCCGCAGATCTGACTGCCGCC
GGCGATGTCGAGTATTATATAGCCGCATATCCTTATGAGTCCGCCGAGGA
AGGCGATTTGAGCTTCAGTGCCGGTGAGATGGTCATGGTCATCAAGAAGG
AGGGTGAGTGGTGGACAGGTACCATTGGTAGCCGCACGGGCATGTTTCCT
TCGAACTATGTCCAAAAGGCTGATGTGGGCACAGCGAGCACAGCCGCTGC
CGAACCGGTAGAATCTCTTGATCAGACGACGCTAAACGGCAACGCTGCCT
ACACCGCTGCTCCCGTGGAGGCACAGGAGCAGGTTTACCAGCCGCTGCCT
GTTCAGGAGCCCAGCGAGCAGCCGATATCTAGCCCAGGCGTTGGCGCCGA
GGAGGCGCACGAAGACCTCGACACTGAAGTTTCCCAGATAAATACACAGT
CCAAAACACAGAGCAGCGAGCCTGCCGAGAGCTACAGCCGACCCATGTCA
CGCACCTCTTCCATGACACCCGGAATGCGTGCCAAGCGGTCTGAGATTGC
TCAAGTAATCGCGCCCTATGAGGCAACCAGCACGGAACAGCTTTCGCTGA
CGAGAGGCCAATTAATAATGATCCGTAAAAAGACGGACTCCGGCTGGTGG
GAGGGTGAGCTGCAGGCAAAGGGTCGACGGCGGCAGATCGGATGGTTCCC
GGCCACTTACGTGAAGGTTCTCCAAGGCGGGCGCAACAGCGGACGGAATA
CTCCGGTTTCCGGTAGTCGAATCGAGATGACTGAACAGATCTTGGACAAG
GTCATTGCTCTCTATCCGTACAAAGCACAAAATGACGACGAGCTGTCGTT
TGATAAGGACGATATCATTAGCGTTCTGGGTCGGGATGAGCCGGAGTGGT
GGCGTGGCGAGCTGAATGGCCTTTCCGGTCTCTTCCCTAGCAACTATGTG
GGGCCCTTCGTGACGTCCGGTAAGCCAGCAAAAGCAAATGGCACCACCAA
GAAGTGAAAGCTTTCTAGACCAT
BS27756.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:23:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dap160-RC | 3291 | CG1099-PC | 1..3291 | 17..3307 | 16425 | 99.9 | Plus |
| Dap160-RA | 3294 | CG1099-PA | 1..3294 | 17..3307 | 16360 | 99.8 | Plus |
| Dap160-RG | 3267 | CG1099-PG | 1..3257 | 17..3270 | 16175 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:23:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dap160-RC | 3970 | CG1099-RC | 334..3625 | 17..3308 | 16430 | 99.9 | Plus |
| Dap160-RA | 3973 | CG1099-RA | 334..3628 | 17..3308 | 16365 | 99.8 | Plus |
| Dap160-RG | 5420 | CG1099-RG | 334..3590 | 17..3270 | 16175 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:23:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 21138712..21139605 | 2575..1682 | 4470 | 100 | Minus |
| 2L | 23513712 | 2L | 21140569..21141008 | 995..556 | 2200 | 100 | Minus |
| 2L | 23513712 | 2L | 21141178..21141553 | 555..180 | 1880 | 100 | Minus |
| 2L | 23513712 | 2L | 21140216..21140490 | 1270..996 | 1375 | 100 | Minus |
| 2L | 23513712 | 2L | 21137757..21138030 | 3095..2822 | 1370 | 100 | Minus |
| 2L | 23513712 | 2L | 21139676..21139942 | 1684..1418 | 1320 | 99.6 | Minus |
| 2L | 23513712 | 2L | 21138112..21138360 | 2822..2574 | 1245 | 100 | Minus |
| 2L | 23513712 | 2L | 21137476..21137689 | 3308..3095 | 1070 | 100 | Minus |
| 2L | 23513712 | 2L | 21141624..21141788 | 181..17 | 810 | 99.4 | Minus |
| 2L | 23513712 | 2L | 21140009..21140156 | 1417..1270 | 740 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:23:53 has no hits.
BS27756.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:32 Download gff for
BS27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dap160-RC | 340..3629 | 17..3306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:59:58 Download gff for
BS27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dap160-RC | 334..3623 | 17..3306 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:18:06 Download gff for
BS27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dap160-RC | 334..3623 | 17..3306 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:18:06 Download gff for
BS27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 21140217..21140490 | 996..1269 | 100 | <- | Minus |
| 2L | 21137478..21137688 | 3096..3306 | 100 | <- | Minus |
| 2L | 21137757..21138030 | 2822..3095 | 100 | <- | Minus |
| 2L | 21138712..21139602 | 1685..2575 | 100 | <- | Minus |
| 2L | 21139676..21139942 | 1418..1684 | 99 | <- | Minus |
| 2L | 21140009..21140156 | 1270..1417 | 100 | <- | Minus |
| 2L | 21140569..21141008 | 556..995 | 100 | <- | Minus |
| 2L | 21141178..21141552 | 181..555 | 100 | <- | Minus |
| 2L | 21141625..21141788 | 17..180 | 99 | | Minus |
| 2L | 21138113..21138358 | 2576..2821 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:59:58 Download gff for
BS27756.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 21140009..21140156 | 1270..1417 | 100 | <- | Minus |
| arm_2L | 21140217..21140490 | 996..1269 | 100 | <- | Minus |
| arm_2L | 21137478..21137688 | 3096..3306 | 100 | <- | Minus |
| arm_2L | 21137757..21138030 | 2822..3095 | 100 | <- | Minus |
| arm_2L | 21138113..21138358 | 2576..2821 | 100 | <- | Minus |
| arm_2L | 21138712..21139602 | 1685..2575 | 100 | <- | Minus |
| arm_2L | 21139676..21139942 | 1418..1684 | 99 | <- | Minus |
| arm_2L | 21140569..21141008 | 556..995 | 100 | <- | Minus |
| arm_2L | 21141178..21141552 | 181..555 | 100 | <- | Minus |
| arm_2L | 21141625..21141788 | 17..180 | 99 | | Minus |
BS27756.pep Sequence
Translation from 16 to 3306
> BS27756.pep
MNSAVDAWAVTPRERLKYQEQFRALQPQAGFVTGAQAKGFFLQSQLPPLI
LGQIWALADTDSDGKMNINEFSIACKLINLKLRGMDVPKVLPPSLLSSLT
GDVPSMTPRGSTSSLSPLDPLKGIVPAVAPVVPVVAPPVAVATVISPPGV
SVPSGPTPPTSNPPSRHTSISERAPSIESVNQGEWAVQAAQKRKYTQVFN
ANDRTRSGYLTGSQARGVLVQSKLPQVTLAQIWTLSDIDGDGRLNCDEFI
LAMFLCEKAMAGEKIPVTLPQEWVPPNLRKIKSRPGSVSGVVSRPGSQPA
SRHASVSSQSGVGVVDADPTAGLPGQTSFEDKRKENYVKGQAELDRRRKI
MEDQQRKEREERERKEREEADKREKARLEAERKQQEELERQLQRQREIEM
EKEEQRKRELEAKEAARKELEKQRQQEWEQARIAEMNAQKEREQERVLKQ
KAHNTQLNVELSTLNEKIKELSQRICDTRAGVTNVKTVIDGMRTQRDTSM
SEMSQLKARIKEQNAKLLQLTQERAKWEAKSKASGAALGGENAQQEQLNA
AFAHKQLIINQIKDKVENISKEIESKKEDINTNDVQMSELKAELSALITK
CEDLYKEYDVQRTSVLELKYNRKNETSVSSAWDTGSSSAWEETGTTVTDP
YAVASNDISALAAPAVDLGGPAPEGFVKYQAVYEFNARNAEEITFVPGDI
ILVPLEQNAEPGWLAGEINGHTGWFPESYVEKLEVGEVAPVAAVEAPVDA
QVATVADTYNDNINTSSIPAASADLTAAGDVEYYIAAYPYESAEEGDLSF
SAGEMVMVIKKEGEWWTGTIGSRTGMFPSNYVQKADVGTASTAAAEPVES
LDQTTLNGNAAYTAAPVEAQEQVYQPLPVQEPSEQPISSPGVGAEEAHED
LDTEVSQINTQSKTQSSEPAESYSRPMSRTSSMTPGMRAKRSEIAQVIAP
YEATSTEQLSLTRGQLIMIRKKTDSGWWEGELQAKGRRRQIGWFPATYVK
VLQGGRNSGRNTPVSGSRIEMTEQILDKVIALYPYKAQNDDELSFDKDDI
ISVLGRDEPEWWRGELNGLSGLFPSNYVGPFVTSGKPAKANGTTKK*
BS27756.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:28:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dap160-PC | 1096 | CG1099-PC | 1..1096 | 1..1096 | 5589 | 100 | Plus |
| Dap160-PA | 1097 | CG1099-PA | 1..1097 | 1..1096 | 5577 | 99.9 | Plus |
| Dap160-PG | 1088 | CG1099-PG | 1..1086 | 1..1085 | 5520 | 99.9 | Plus |
| Dap160-PD | 1190 | CG1099-PD | 1..1081 | 1..1084 | 5474 | 99.4 | Plus |
| Dap160-PH | 1005 | CG1099-PH | 1..996 | 1..999 | 4368 | 87.5 | Plus |
