BS27759.complete Sequence
1934 bp assembled on 2011-10-14
GenBank Submission: KX802196
> BS27759.complete
GAAGTTATCAGTCGACATGGATACGACGCAAAGGAACCACCAAAATCTAG
CCTTCGTGGGCGACGACGGACGCAGTACGGCCAGCACAGTGGAGATTTCG
ACCAACAGTCCAGCCCTGCGAGATAATTCCGATGACCAGGAGGCAGCCAA
AGTGCCAGAGGAGCGTGCCACCTGGGGCAAGGGCGTGGAGTTTCTGATGT
CCTGCATCGCCATGTCCGTGGGTCTGGGAAACGTGTGGCGATTCCCCTTT
ACTGCCCTCGATAATGGCGGTGGCGCCTTCCTCATACCATATCTCATTGT
CCTGTTCCTGATTGGCAAACCGATTTACTATCTGGAAATGGTAATTGGCC
AGTTTTCCAGTCGGGGCTCGGTTAAAGTGTTCGATTTGTGCCCGGCGATG
AAAGGTGTCGGAATCGGCCAGGTGATATCTATATCCATGGTGACCACCTA
CTATGTGGCCATAATGGGCATAACCCTGCGCTATCTGTACGAATCGTTCC
GGTCGCCGTTGCCCTGGTCTGAGTGCCGACCGGAATGGGAATCCTTCTGC
GTAGCGTCCAGTCTGGGTAACACCTCCCAGTCCCTGGCCAGTCCCATGGA
CATGGATAGTTTGCCCCAGCGGCAGCCAGTGGCATCCGCGGAGTTGTATT
TTCTTAAGGAAGTGCTGCACGAGAAACCAAATATCGAGGAAGGAATCGGC
CTACCAAACTGGGAGTTGGTCATTGGACTTTTTATCGCCTGGTCCTGTGT
GTTTTTCATTATTCGTCGCGGAGTGAAGAGTTCGGGAAAGGCATCCTACT
TCCTGGCCCTTTTCCCGTACGTCATCATGGGTGTTCTTCTGGTGCGAGCT
GTAACTCTGCCGGGATCAATAGACGGTATATACTACTTTATAAAGCCGCA
ATGGGGAAAGATTTTGGACCCGAAGGTTTGGTACGCGGCTGTAACTCAGT
GTTTCTACTCCTTGTCCGTTTGTTTCGGCAACATCATCATGTACTCCTCG
TTCAACAAGTTCGGGCACAATGTACACAGGGATGCAGCAATTGTAACGGG
TCTGGACACTATGACCTCTCTGCTAGCTGGATTCACGATATTCGGTATCC
TCGGCCATCTGGCCCACGAAATCGGAACCGATGACATCGGCTCAGTTGTG
AAGGGCGGTGCCGGATTGGCCTTCATCTCATATCCCGATGCCATTGCCAA
GTTCAAGAATCTGCCACAAATCTTCTCAGTGCTGTTCTTCCTCATGCTCT
TCGTGTTGGGCATAGGATCGAATATAGCCATGACCTCCTGCTCGGTGACC
GCCATTCGGGATCGGTTTCCCAACTTTGGGCAGTGGCAGTGCTCGCTGCT
CATCGCTGTAGTCAGTTTCTTTATTGGATTAATGTATATAACACCGGGCG
GTCAGTATATGCTGACTCTTGTGGACTTTTTCGGCGCCTCAATGATTGCT
TTGGTACTGGGAATCGCCGAGCTGTACACCATTGGATGGATTTATGGCAC
AGATCGCCTGTGCAAGGACATTGAGTTCATGCTGGGTCGCAAAGTGGGCC
TGTACTGGAGGCTCTGCTGGAGCATCATTACCCCGCTGATCATGACTGTT
ATTCTGATCTATTTCTATGCGACCTACCAACCTCTAACATACAACAATAT
CGTCTATCCAAATTGGTCTTACTCAATTGGTTGGCTAATAACGGCCTTCG
GTATTCTTCAGCTGCCCATTTGGATGATCGTGGCCATTGTTCGAGATCCA
GGTCAGACTTTGGGTGCAAAAATCCGTGGAGCCTTTACGCCGAAAAAGAA
TTGGGGACCCAGTGACCCTCTGCTCCGGGAACAGTATCACAAGGAAATCG
AGAATGAGTTGACCCCGAAACGTGGTCAGGGAATTTGGGCTGCCATCAAG
CAAAACATCTTTGGTTGAAAGCTTTCTAGACCAT
BS27759.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:19:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-RD | 1902 | CG15279-PD | 1..1902 | 17..1918 | 9510 | 100 | Plus |
| CG15279-RA | 1920 | CG15279-PA | 641..1920 | 639..1918 | 6340 | 99.7 | Plus |
| CG15279-RB | 1920 | CG15279-PB | 641..1920 | 639..1918 | 6340 | 99.7 | Plus |
| CG15279-RA | 1920 | CG15279-PA | 1..406 | 17..422 | 1970 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-RD | 2513 | CG15279-RD | 488..2389 | 17..1918 | 9510 | 100 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 707..1986 | 639..1918 | 6340 | 99.7 | Plus |
| CG15279-RB | 2531 | CG15279-RB | 1128..2407 | 639..1918 | 6340 | 99.7 | Plus |
| CG15279-RA | 2110 | CG15279-RA | 67..472 | 17..422 | 1970 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 14845752..14846494 | 1397..655 | 3715 | 100 | Minus |
| 2L | 23513712 | 2L | 14848672..14848978 | 406..100 | 1535 | 100 | Minus |
| 2L | 23513712 | 2L | 14845417..14845694 | 1673..1396 | 1390 | 100 | Minus |
| 2L | 23513712 | 2L | 14848005..14848256 | 654..403 | 1260 | 100 | Minus |
| 2L | 23513712 | 2L | 14845117..14845361 | 1918..1674 | 1225 | 100 | Minus |
| 2L | 23513712 | 2L | 14849039..14849122 | 100..17 | 420 | 100 | Minus |
| 3L | 28110227 | 3L | 9213732..9214227 | 766..1261 | 380 | 71.8 | Plus |
| 2R | 25286936 | 2R | 12300722..12300885 | 336..173 | 325 | 79.9 | Minus |
| 3L | 28110227 | 3L | 9212982..9213163 | 186..367 | 310 | 78 | Plus |
| X | 23542271 | X | 5407749..5407901 | 312..160 | 255 | 77.8 | Minus |
| 2R | 25286936 | 2R | 9795678..9795857 | 188..367 | 240 | 75.6 | Plus |
| 2R | 25286936 | 2R | 9797149..9797273 | 1167..1291 | 235 | 79.2 | Plus |
| 2R | 25286936 | 2R | 18728844..18728914 | 1218..1148 | 235 | 88.7 | Minus |
| 2R | 25286936 | 2R | 12299631..12299734 | 1275..1172 | 220 | 80.8 | Minus |
| X | 23542271 | X | 5406453..5406559 | 1269..1163 | 220 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:19:45 has no hits.
BS27759.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-10-14 10:43:24 Download gff for
BS27759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RD | 488..2388 | 17..1917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:58:05 Download gff for
BS27759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RD | 488..2388 | 17..1917 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:16:30 Download gff for
BS27759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG15279-RD | 488..2388 | 17..1917 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:16:30 Download gff for
BS27759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 14845118..14845361 | 1674..1917 | 100 | <- | Minus |
| 2L | 14845417..14845693 | 1397..1673 | 100 | <- | Minus |
| 2L | 14845753..14846494 | 655..1396 | 100 | <- | Minus |
| 2L | 14848005..14848254 | 405..654 | 100 | <- | Minus |
| 2L | 14848674..14848977 | 101..404 | 100 | <- | Minus |
| 2L | 14849039..14849122 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:58:05 Download gff for
BS27759.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 14845118..14845361 | 1674..1917 | 100 | <- | Minus |
| arm_2L | 14845417..14845693 | 1397..1673 | 100 | <- | Minus |
| arm_2L | 14845753..14846494 | 655..1396 | 100 | <- | Minus |
| arm_2L | 14848005..14848254 | 405..654 | 100 | <- | Minus |
| arm_2L | 14848674..14848977 | 101..404 | 100 | <- | Minus |
| arm_2L | 14849039..14849122 | 17..100 | 100 | | Minus |
BS27759.pep Sequence
Translation from 16 to 1917
> BS27759.pep
MDTTQRNHQNLAFVGDDGRSTASTVEISTNSPALRDNSDDQEAAKVPEER
ATWGKGVEFLMSCIAMSVGLGNVWRFPFTALDNGGGAFLIPYLIVLFLIG
KPIYYLEMVIGQFSSRGSVKVFDLCPAMKGVGIGQVISISMVTTYYVAIM
GITLRYLYESFRSPLPWSECRPEWESFCVASSLGNTSQSLASPMDMDSLP
QRQPVASAELYFLKEVLHEKPNIEEGIGLPNWELVIGLFIAWSCVFFIIR
RGVKSSGKASYFLALFPYVIMGVLLVRAVTLPGSIDGIYYFIKPQWGKIL
DPKVWYAAVTQCFYSLSVCFGNIIMYSSFNKFGHNVHRDAAIVTGLDTMT
SLLAGFTIFGILGHLAHEIGTDDIGSVVKGGAGLAFISYPDAIAKFKNLP
QIFSVLFFLMLFVLGIGSNIAMTSCSVTAIRDRFPNFGQWQCSLLIAVVS
FFIGLMYITPGGQYMLTLVDFFGASMIALVLGIAELYTIGWIYGTDRLCK
DIEFMLGRKVGLYWRLCWSIITPLIMTVILIYFYATYQPLTYNNIVYPNW
SYSIGWLITAFGILQLPIWMIVAIVRDPGQTLGAKIRGAFTPKKNWGPSD
PLLREQYHKEIENELTPKRGQGIWAAIKQNIFG*
BS27759.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:27:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG15279-PD | 633 | CG15279-PD | 1..633 | 1..633 | 3337 | 100 | Plus |
| CG15279-PA | 639 | CG15279-PA | 1..639 | 1..633 | 3065 | 91.3 | Plus |
| CG15279-PB | 639 | CG15279-PB | 1..639 | 1..633 | 3065 | 91.3 | Plus |
| CG1698-PB | 654 | CG1698-PB | 41..654 | 17..633 | 1846 | 56.5 | Plus |
| CG1698-PA | 654 | CG1698-PA | 41..654 | 17..633 | 1846 | 56.5 | Plus |
