BS27762.complete Sequence
689 bp assembled on 2011-09-22
GenBank Submission: KX806029
> BS27762.complete
GAAGTTATCAGTCGACATGAACGATGACGCCCGATCGCCGGGCGCTGGTA
GTACTCCCGGTCCACTGTCACAGCAGCCACCTGCCCTAGATACATCAGAC
CCTGATGGACGATGGTGTCGAAGAGAATGGTCCTCACCTGCCGATGCTCG
CAATGCAGACGCTTCCCGGCGATTGTATTCCTCAGTCTTCCTCGGTAGTC
CTGACAATTTCGGAACGAGTGCAAGCGGTGATGCCAGCAATGCCAGCATA
GGAAGTGGAGAGGGCACCGGCGAGGAGGACGACGATGCGAGCGGCAAAAA
GAACCAAAAGAAACGTGGCATTTTCCCAAAAGTAGCAACCAACATATTGA
GAGCGTGGCTGTTTCAGCATTTAACGCATCCCTACCCATCCGAGGACCAG
AAGAAACAATTGGCCCAGGACACCGGCCTAACGATACTGCAAGTGAATAA
TTGGTTCATCAATGCGCGGCGGAGAATTGTCCAGCCAATGATCGATCAAT
CGAATCGTGCAGTCTATACACCGCATCCAGGTCCCTCCGGATATGGCCAC
GACGCCATGGGCTACATGATGGACAGCCAGGCGCATATGATGCACCGTCC
GCCCGGAGATCCGGGCTTCCACCAGGGCTATCCGCATTACCCGCCCGCCG
AGTACTACGGCCAGCACTTGTAAAAGCTTTCTAGACCAT
BS27762.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:44:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 1419 | CG17117-PA | 763..1419 | 17..673 | 3285 | 100 | Plus |
| hth-RC | 1464 | CG17117-PC | 894..1464 | 103..673 | 2855 | 100 | Plus |
| hth-RC | 1464 | CG17117-PC | 763..854 | 17..108 | 460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-RA | 4226 | CG17117-RA | 2040..2696 | 17..673 | 3285 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2171..2741 | 103..673 | 2855 | 100 | Plus |
| hth-RC | 6557 | CG17117-RC | 2040..2131 | 17..108 | 460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:44:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 10511377..10511540 | 673..510 | 820 | 100 | Minus |
| 3R | 32079331 | 3R | 10521072..10521221 | 376..227 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 10533911..10534007 | 203..107 | 485 | 100 | Minus |
| 3R | 32079331 | 3R | 10561909..10561996 | 104..17 | 440 | 100 | Minus |
| 3R | 32079331 | 3R | 10514266..10514345 | 455..376 | 400 | 100 | Minus |
| 3R | 32079331 | 3R | 10511759..10511818 | 512..453 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:44:10 has no hits.
BS27762.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:11 Download gff for
BS27762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RG | 417..1071 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:28 Download gff for
BS27762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2040..2694 | 17..671 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:33 Download gff for
BS27762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hth-RA | 2040..2694 | 17..671 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:33 Download gff for
BS27762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 10511379..10511537 | 513..671 | 100 | <- | Minus |
| 3R | 10511759..10511817 | 454..512 | 100 | <- | Minus |
| 3R | 10514268..10514344 | 377..453 | 100 | <- | Minus |
| 3R | 10521072..10521220 | 228..376 | 100 | <- | Minus |
| 3R | 10529439..10529462 | 204..227 | 100 | <- | Minus |
| 3R | 10533911..10534006 | 108..203 | 100 | <- | Minus |
| 3R | 10561905..10561996 | 17..107 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:28 Download gff for
BS27762.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 6337101..6337259 | 513..671 | 100 | <- | Minus |
| arm_3R | 6337481..6337539 | 454..512 | 100 | <- | Minus |
| arm_3R | 6339990..6340066 | 377..453 | 100 | <- | Minus |
| arm_3R | 6346794..6346942 | 228..376 | 100 | <- | Minus |
| arm_3R | 6355161..6355184 | 204..227 | 100 | <- | Minus |
| arm_3R | 6359633..6359728 | 108..203 | 100 | <- | Minus |
| arm_3R | 6387627..6387718 | 17..107 | 96 | | Minus |
BS27762.pep Sequence
Translation from 16 to 672
> BS27762.pep
MNDDARSPGAGSTPGPLSQQPPALDTSDPDGRWCRREWSSPADARNADAS
RRLYSSVFLGSPDNFGTSASGDASNASIGSGEGTGEEDDDASGKKNQKKR
GIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINA
RRRIVQPMIDQSNRAVYTPHPGPSGYGHDAMGYMMDSQAHMMHRPPGDPG
FHQGYPHYPPAEYYGQHL*
BS27762.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hth-PA | 472 | CG17117-PA | 255..472 | 1..218 | 1199 | 100 | Plus |
| hth-PC | 487 | CG17117-PC | 255..487 | 1..218 | 1173 | 93.6 | Plus |
| achi-PA | 426 | CG8819-PA | 94..156 | 97..159 | 181 | 52.4 | Plus |
| achi-PD | 555 | CG8819-PD | 94..156 | 97..159 | 181 | 52.4 | Plus |
| achi-PC | 555 | CG8819-PC | 94..156 | 97..159 | 181 | 52.4 | Plus |
