BS27763.complete Sequence
3113 bp assembled on 2011-11-14
GenBank Submission: KX802794
> BS27763.complete
GAAGTTATCAGTCGACATGGCGGATGGTGGGCATTCATTCGTGAAGAAGA
CATTTCATAAGCCAACATACTGTCACCACTGCTCGGATCTGCTCTGGGGC
CTCATCCAGCAGGGATATATCTGCGAAGTTTGCAACTTTATCATTCACGA
ACGATGTGTCAGCAGCGTGGTAACGCCCTGTTCCGGCATCGCTCCATGTA
TTATAAAGAATCCCGTTGCCCATTGTTGGTCCGAGCCAACTCATCACAAG
AGAAAATTCTGCACAGTTTGCCGTAAGCGATTGGATGAAACGCCAGCGGT
GCATTGTTTAGTCTGCGAATATTTCGCGCATATTGAGTGCCAAGATTTTG
CCGTGCCCGATTGCACCGAGAATGCCACGTATGTGCCAGGCAAGGAGCTG
CTTAATGTGAAGCATCAGCATCACTGGCGAGAGGGCAATCTTCCATCAAC
GTCCAAATGCGCTTACTGCAAGAAAACCTGTTGGTCCTCGGAATGTCTCA
CTGGCTATCGTTGCGAGTGGTGTGGCATGACGACCCATGCCGGATGTCGC
ATGTACCTGCCAACCGAATGTAATTTTGGTATTCTACAACCTATCTACTT
ACCTCCGCACTCAGTCTCGATTCCGCGCACCGAGGTGCCCATCGAGGCCA
TCATCGGCGTCCAGGTCAAATCGAAGACTTCGCTCGTGCGCGACTACTCG
TGTCCACGCAGCATATCCGAGGAGTTCAGCAGCGGCGACACACCTCGTTT
CAAGGACGAGGAGTCGGCCAGCAAGGCCGAATCGGGACATGGACCCAGCA
GTGGTGGTGCAGGTGGTGGAGGCGGAAGTGGCGGTGCTGGAGGCTCATCC
GCAGCTGGTGCATCGGCATCGGCTGCCGGTGGCTCCTCCGGGCACTATAG
ACCCGATTCCGGTTCCGGTCACAAATCGGATAAATCGGAGAAGGATCGCG
AGAAGAAGGAGAAGGAGCGCGAGGAAAAGGATATAGAGATGATCAAGGTG
TTCGATGGCAACAACTCATTCCGACGCCAGCAGTACCGCGTGATCATCGT
GCAGCGCACCTATACGCTGGAGCAGCTGCTGACCACCGCGCTGCGGGCAT
TCCACATTACGCGCGACCCGCAGGCCTTCTATCTGACCGATCTGTATGCA
CCCGCCGGCATGGAGGATACTCCGATGCTCGATCCCACGCCCGTGCTAAA
CCTGGTGCACCTGGAGGGCAAGCGACCGGCCATATACCTCCGGTTCCACG
ACCGTGACCGTGGCCATGTGCGCGTCTACCCCGGCAAGCTGCAGTGCTCG
ATGCTGGAGGATCCCTATGTCAGTGTTCCTGTAGATAATAGCACAGTTAT
TAAGGATTTGATACGCGATGCCCTGGACAAGTTCGGGCTGCAGGATAACC
AGATACAGGACTACAGGTGCTCGGAAGTGTTGCTCGATCGCGGCGTGACC
GAACGCATTTTGTCGTGGAACGAAAGGCCCTGGGATATTATGAAGCAGCT
GGGCAAGGACTCCATTCGACAGATGGAGCTCATGCGGTTCTACATGCAGC
ACAAGCAGGATCCGCATGGTCCCAATATCGCGCTGTTCGTGGGCAATCTG
CCCACCGGTCTCTCGCAGCGCAACTACGAGCAGATCCTCAACAAGTACGT
AACCGACGAAAATAAGTTCATCAGCATCGGACCCATCTACTACGAGTATG
GCTCAGTGGTGCTCACCTTTGAGGACTCCATGAAGGCGGTTCGCGCCTTC
TACAATCTCCGCGAGACCATTATCGAGGACAAGAAACTGCTGGTTCTGCT
CCTGCCGAACATCGAGCCCAGCATGGTGCCCTCGGATGTGAGACCACTGC
TGGTCTTTGTCAATGTTAAGTCCGGTGGTTGCCAGGGATTGGAGCTGATC
TCCAGCTTCAGGAAACTGCTGAATCCCTACCAGGTATTCGATCTGGATAA
TGGCGGTCCTTTGCCTGGTTTGTATGTATTCCGGCAAATAACCAACTACA
AGATTCTGGTTTGCGGCGGAGATGGCACCATTGGTTGGGTGCTGCAGTGC
CTGGACAATGTAGGCCAGGACTCGGAGTGCTCCAGCCCACCTTGCGCCAT
TGTTCCACTGGGAACAGGCAACGACTTGGCTCGCGTTTTGTGCTGGGGCT
CCGGCTACACCGGCGGTGAGGATCCGTTGAATCTGCTGCGCGATGTTATC
GAGGCGGAGGAGATACGGCTGGACCGCTGGACGGTTGTCTTCCATCCAGA
GGACAAGCCCGAAGAGCCGGCTATGAAGGCGCCCTCGCAAACAACCGGCG
GTGCCCAAAACGAGGATAACTCTCAGATCTTCGTGATGAACAACTACTTT
GGCATTGGAATAGATGCGGACCTCTGCCTGGACTTCCACAATGCGCGTGA
AGAGAATCCCAATCAGTTTAATTCGCGTCTGCGCAACAAGGGCTACTACG
TCAAGATGGGACTGCGCAAGATCGTGGGTCGCAAGGCTGTCAAGGATCTG
CAAAAGGAACTGCGCCTGGAGGTCGATGGCAAGATTGTCGAACTGCCGCC
CGTCGATGGCATCATCATCTTGAACATTTTAAGCTGGGGCAGCGGTGCCA
ATCCCTGGGGTCCCGACAAGGACGACCAGTTCTCAACGCCCAACCATTAC
GATGGAATGTTGGAGGTGGTCGGTGTTACGGGCGTGGTTCACTTGGGTCA
AATCCAATCCGGAATTCGTACGGCCATGCGCATAGCTCAGGGTGGTCACA
TCAAGATACACTTGAATACCGATATGCCCGTCCAGGTGGACGGTGAGCCC
TGGATTCAGAGTCCCGGCGATGTGGTCGTCCTAAAGTCGGCCCTCAAGGC
CACCATGCTGAAGAAAACGAAGAGTAAGCGCCGCCTCACGGAGCCTCATA
TCTCGCCGGCGGTTCTGAGTCTTTCAGTGGCTCAACAGGGATCGGGATCG
GGATCCATGTCGGTATCGGGATCCCCGCAGTCCCAGTCGCAGCAGCAACT
GCAGCAGCAACAACAACAGCAGCAGCAGCAACAGCTGGCCGAGAATGGGG
AGAAGGAGGCTTCGATGACTCTACCTGCCGGCTTTGGCAGCACCTAGAAG
CTTTCTAGACCAT
BS27763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:49:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31140-RF | 3081 | CG31140-PF | 1..3081 | 17..3097 | 15405 | 100 | Plus |
| CG31140-RB | 3168 | CG31140-PB | 1..1952 | 17..1968 | 9760 | 100 | Plus |
| CG31140-RG | 4497 | CG31140-PG | 2018..3281 | 705..1968 | 6320 | 100 | Plus |
| CG31140-RB | 3168 | CG31140-PB | 2437..3002 | 2297..2862 | 2815 | 99.8 | Plus |
| CG31140-RB | 3168 | CG31140-PB | 2012..2342 | 1968..2298 | 1655 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:49:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31140-RF | 4144 | CG31140-RF | 846..3927 | 17..3098 | 15410 | 100 | Plus |
| CG31140-RB | 5330 | CG31140-RB | 836..2787 | 17..1968 | 9760 | 100 | Plus |
| CG31140-RG | 6647 | CG31140-RG | 2841..4104 | 705..1968 | 6320 | 100 | Plus |
| CG31140-RB | 5330 | CG31140-RB | 3272..3837 | 2297..2862 | 2815 | 99.8 | Plus |
| CG31140-RB | 5330 | CG31140-RB | 2847..3177 | 1968..2298 | 1655 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 23976502..23976935 | 985..1418 | 2170 | 100 | Plus |
| 3R | 32079331 | 3R | 23976994..23977320 | 1414..1740 | 1635 | 100 | Plus |
| 3R | 32079331 | 3R | 23978949..23979235 | 2297..2583 | 1435 | 100 | Plus |
| 3R | 32079331 | 3R | 23976166..23976447 | 705..986 | 1410 | 100 | Plus |
| 3R | 32079331 | 3R | 23980526..23980777 | 2847..3098 | 1260 | 100 | Plus |
| 3R | 32079331 | 3R | 23977382..23977612 | 1738..1968 | 1155 | 100 | Plus |
| 3R | 32079331 | 3R | 23973353..23973554 | 503..704 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 23977934..23978116 | 2116..2298 | 915 | 100 | Plus |
| 3R | 32079331 | 3R | 23979292..23979456 | 2577..2741 | 810 | 99.4 | Plus |
| 3R | 32079331 | 3R | 23977672..23977822 | 1968..2118 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 23966591..23966702 | 17..128 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 23979512..23979623 | 2738..2849 | 560 | 100 | Plus |
| 3R | 32079331 | 3R | 23973033..23973141 | 310..418 | 545 | 100 | Plus |
| 3R | 32079331 | 3R | 23972607..23972711 | 207..311 | 525 | 100 | Plus |
| 3R | 32079331 | 3R | 23973205..23973293 | 416..504 | 445 | 100 | Plus |
| 3R | 32079331 | 3R | 23972446..23972527 | 127..208 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:49:10 has no hits.
BS27763.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-14 09:53:52 Download gff for
BS27763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RF | 846..3926 | 17..3097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:27 Download gff for
BS27763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RF | 846..3926 | 17..3097 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:04:34 Download gff for
BS27763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31140-RF | 846..3926 | 17..3097 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:04:34 Download gff for
BS27763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 23966591..23966702 | 17..128 | 100 | -> | Plus |
| 3R | 23972448..23972527 | 129..208 | 100 | -> | Plus |
| 3R | 23972609..23972711 | 209..311 | 100 | -> | Plus |
| 3R | 23973035..23973141 | 312..418 | 100 | -> | Plus |
| 3R | 23973208..23973292 | 419..503 | 100 | -> | Plus |
| 3R | 23977673..23977821 | 1969..2117 | 100 | -> | Plus |
| 3R | 23977936..23978115 | 2118..2297 | 100 | -> | Plus |
| 3R | 23973354..23973554 | 504..704 | 100 | -> | Plus |
| 3R | 23976166..23976447 | 705..986 | 100 | -> | Plus |
| 3R | 23976504..23976933 | 987..1416 | 100 | -> | Plus |
| 3R | 23976997..23977318 | 1417..1738 | 100 | -> | Plus |
| 3R | 23977383..23977612 | 1739..1968 | 100 | -> | Plus |
| 3R | 23978950..23979235 | 2298..2583 | 100 | -> | Plus |
| 3R | 23979299..23979455 | 2584..2740 | 100 | -> | Plus |
| 3R | 23979515..23979622 | 2741..2848 | 100 | -> | Plus |
| 3R | 23980528..23980776 | 2849..3097 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:27 Download gff for
BS27763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19803105..19803334 | 1739..1968 | 100 | -> | Plus |
| arm_3R | 19803395..19803543 | 1969..2117 | 100 | -> | Plus |
| arm_3R | 19802226..19802655 | 987..1416 | 100 | -> | Plus |
| arm_3R | 19792313..19792424 | 17..128 | 100 | -> | Plus |
| arm_3R | 19798170..19798249 | 129..208 | 100 | -> | Plus |
| arm_3R | 19798331..19798433 | 209..311 | 100 | -> | Plus |
| arm_3R | 19798757..19798863 | 312..418 | 100 | -> | Plus |
| arm_3R | 19798930..19799014 | 419..503 | 100 | -> | Plus |
| arm_3R | 19799076..19799276 | 504..704 | 100 | -> | Plus |
| arm_3R | 19801888..19802169 | 705..986 | 100 | -> | Plus |
| arm_3R | 19803658..19803837 | 2118..2297 | 100 | -> | Plus |
| arm_3R | 19802719..19803040 | 1417..1738 | 100 | -> | Plus |
| arm_3R | 19804672..19804957 | 2298..2583 | 100 | -> | Plus |
| arm_3R | 19805021..19805177 | 2584..2740 | 100 | -> | Plus |
| arm_3R | 19805237..19805344 | 2741..2848 | 100 | -> | Plus |
| arm_3R | 19806250..19806498 | 2849..3097 | 100 | | Plus |
BS27763.pep Sequence
Translation from 16 to 3096
> BS27763.pep
MADGGHSFVKKTFHKPTYCHHCSDLLWGLIQQGYICEVCNFIIHERCVSS
VVTPCSGIAPCIIKNPVAHCWSEPTHHKRKFCTVCRKRLDETPAVHCLVC
EYFAHIECQDFAVPDCTENATYVPGKELLNVKHQHHWREGNLPSTSKCAY
CKKTCWSSECLTGYRCEWCGMTTHAGCRMYLPTECNFGILQPIYLPPHSV
SIPRTEVPIEAIIGVQVKSKTSLVRDYSCPRSISEEFSSGDTPRFKDEES
ASKAESGHGPSSGGAGGGGGSGGAGGSSAAGASASAAGGSSGHYRPDSGS
GHKSDKSEKDREKKEKEREEKDIEMIKVFDGNNSFRRQQYRVIIVQRTYT
LEQLLTTALRAFHITRDPQAFYLTDLYAPAGMEDTPMLDPTPVLNLVHLE
GKRPAIYLRFHDRDRGHVRVYPGKLQCSMLEDPYVSVPVDNSTVIKDLIR
DALDKFGLQDNQIQDYRCSEVLLDRGVTERILSWNERPWDIMKQLGKDSI
RQMELMRFYMQHKQDPHGPNIALFVGNLPTGLSQRNYEQILNKYVTDENK
FISIGPIYYEYGSVVLTFEDSMKAVRAFYNLRETIIEDKKLLVLLLPNIE
PSMVPSDVRPLLVFVNVKSGGCQGLELISSFRKLLNPYQVFDLDNGGPLP
GLYVFRQITNYKILVCGGDGTIGWVLQCLDNVGQDSECSSPPCAIVPLGT
GNDLARVLCWGSGYTGGEDPLNLLRDVIEAEEIRLDRWTVVFHPEDKPEE
PAMKAPSQTTGGAQNEDNSQIFVMNNYFGIGIDADLCLDFHNAREENPNQ
FNSRLRNKGYYVKMGLRKIVGRKAVKDLQKELRLEVDGKIVELPPVDGII
ILNILSWGSGANPWGPDKDDQFSTPNHYDGMLEVVGVTGVVHLGQIQSGI
RTAMRIAQGGHIKIHLNTDMPVQVDGEPWIQSPGDVVVLKSALKATMLKK
TKSKRRLTEPHISPAVLSLSVAQQGSGSGSMSVSGSPQSQSQQQLQQQQQ
QQQQQQLAENGEKEASMTLPAGFGST*
BS27763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31140-PF | 1026 | CG31140-PF | 1..1026 | 1..1026 | 5494 | 100 | Plus |
| CG31140-PB | 1055 | CG31140-PB | 1..1014 | 1..960 | 5069 | 94.4 | Plus |
| CG31140-PH | 1571 | CG31140-PH | 740..1555 | 231..1026 | 4134 | 97.5 | Plus |
| CG31140-PD | 1555 | CG31140-PD | 740..1555 | 231..1026 | 4134 | 97.5 | Plus |
| CG31140-PG | 1498 | CG31140-PG | 674..1457 | 231..960 | 3740 | 92.7 | Plus |
| CG31140-PH | 1571 | CG31140-PH | 1..230 | 1..230 | 1329 | 100 | Plus |
| CG31140-PD | 1555 | CG31140-PD | 1..230 | 1..230 | 1329 | 100 | Plus |
