BS27764.complete Sequence
1985 bp assembled on 2013-09-16
GenBank Submission: KX803481
> BS27764.complete
GAAGTTATCAGTCGACATGCGCATAATTCAACCGGTCCAAGGGACCAGAT
ACGGTCCATGGCCGGCCGTGGGACTGAGGCTAGTCCTGGCCCTTGCCTGG
GCAACGTCGGCAGCGGCTGCCATGGAGTCATCAGCCGAGCTGCAGGCCCT
GGGCTACGAGGCAATTAGGCCAGGTGCTGCCTCAATTAGCACATCCAGCC
CATCCAGCTCGCCACCCGGAGAATCGGCATCGACTGTGACTGCAGGGGGG
ACTCCGATTCCACCGCGCTCCGATTGGAAGTACAAACGGACGAAAGTCAA
ACGCCGGCAGCAGCGCCTCAATTCGCACAGCAATCTGCCCGGAAGCACCA
ATGCCTCCCACGCCCACCACCTCCTCAATCTGCCCCCCAGGCAGCGATAC
TTGAAGGTCAACCAGGTGTTCGAAAGCGAACGCCGCATGTCGCCGGCCGA
AATGCAGCGCAATCATGGCAAAATCGTGCTGCTCGGACTCTTTGAGCTGT
CCACATCGCGGGGACCACGTCCGGATGGTCTGAGCGAATTGGGAGCTGCC
ACCATGGCCGTGGAGCACATCAACCGCAAGCGCCTGCTGCCGGGCTACAC
CCTCGAGCTCGTGACCAACGATACTCAGTGTGATCCTGGAGTGGGCGTGG
ATCGCTTCTTCCACGCCATCTACACACAGCCCTCGACGAGGATGGTGATG
CTGCTGGGATCGGCCTGCTCGGAGGTCACCGAGAGCCTGGCGAAGGTGGT
GCCCTACTGGAACATCGTGCAGGTATCCTTCGGTTCCACATCGCCGGCGT
TGAGCGACAGGCGGGAGTTCCCCTACTTCTACAGGACGGTGGCCCCGGAC
TCCTCACACAATCCGGCGCGCATCGCTTTCATTCGGAAGTTTGGCTGGGG
CACGGTGACCACTTTCTCGCAGAACGAGGAGGTTCACTCGCTGGCGGTGA
ACAACCTGGTCACCGAACTGGAGGCGGCCAACATATCCTGTGCCGCCACC
ATCACCTTTGCGGCCACCGACTTCAAGGAGCAGCTGCTGCTACTTAGGGA
GACGGACACGCGCATCATCATCGGCAGCTTCTCGCAGGAGCTGGCCCCCC
AGATCCTGTGCGAGGCCTACAGGCTTCGAATGTTCGGGGCGGACTACGCC
TGGATCCTCCACGAGAGCATGGGGGCTCCGTGGTGGCCGGACCAGCGCAC
CGCCTGCTCTAACCACGAACTGCAGCTGGCCGTCGAGAACCTCATCGTGG
TCTCAACGCACAACAGCATCGTTGGAAATAACGTCAGCTATAGTGGACTG
AACAATCACATGTTCAACTCCCAGCTGCGCAAGCAATCCGCCCAGTTCCA
CGGCCAGGATGGATTTGGCTCCGGTTATGGTTCCAGGATCAGTATCGCTG
CAACGCAATCTGACTCTCGTCGGCGGAGGAGAAGGGGCGTGGGAGGCACC
AGCGGAGGGCACCTCTTTCCGGAGGCGATCTCGCAGTACGCGCCGCAAAC
CTACGACGCCGTGTGGGCCATCGCCCTGGCCTTGAGAGCCGCTGAGGAGC
ACTGGCGGCGGAACGAGGAGCAGTCGAAGCTGGACGGATTCGATTACACC
CGCAGCGACATGGCCTGGGAGTTCCTGCAGCAAATGGGCAAGCTCCACTT
CCTGGGAGTGTCGGGCCCCGTTTCCTTCAGCGGCCCAGATCGCGTTGGCA
CCACTGCCTTCTATCAAATCCAGCGCGGTTTGCTGGAACCGGTGGCCCTC
TACTATCCGGCCACGGATGCCCTGGACTTCCGGTGTCCCCGCTGCCGGCC
GGTGAAGTGGCACAGCGGGCAGGTACCCATCGCCAAGCGGGTGTTCAAGC
TGCGGGTGGCGACCATCGCTCCACTGGCCTTCTACACCATCGCCACCCTC
TCCAGCGTGGGAATCGCTCTGGCCATCGCCTTCCTGGCGTTCAATCTGCA
CTTTCGGAAGCTGAAGTAAAAGCTTTCTAGACCAT
BS27764.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:01:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABA-B-R3-RC | 1953 | CG3022-PC | 1..1953 | 17..1969 | 9765 | 100 | Plus |
GABA-B-R3-RG | 3918 | CG3022-PG | 1..1950 | 17..1966 | 9750 | 100 | Plus |
GABA-B-R3-RE | 3918 | CG3022-PE | 1..1950 | 17..1966 | 9750 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:01:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABA-B-R3-RC | 2359 | CG3022-RC | 320..2272 | 17..1969 | 9765 | 100 | Plus |
GABA-B-R3-RG | 5987 | CG3022-RG | 584..2533 | 17..1966 | 9750 | 100 | Plus |
GABA-B-R3-RE | 5991 | CG3022-RE | 845..2794 | 17..1966 | 9750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:01:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 753119..753730 | 17..628 | 3060 | 100 | Plus |
2L | 23513712 | 2L | 756667..757031 | 1300..1664 | 1825 | 100 | Plus |
2L | 23513712 | 2L | 757127..757433 | 1663..1969 | 1535 | 100 | Plus |
2L | 23513712 | 2L | 755019..755297 | 771..1049 | 1395 | 100 | Plus |
2L | 23513712 | 2L | 755828..756080 | 1048..1300 | 1265 | 100 | Plus |
2L | 23513712 | 2L | 754483..754632 | 625..774 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 14:01:53 has no hits.
BS27764.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-16 16:30:30 Download gff for
BS27764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABA-B-R3-RC | 320..2270 | 17..1967 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:39:48 Download gff for
BS27764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GABA-B-R3-RC | 320..2270 | 17..1967 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 14:39:48 Download gff for
BS27764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 753119..753730 | 17..628 | 100 | -> | Plus |
2L | 754487..754630 | 629..772 | 100 | -> | Plus |
2L | 755021..755296 | 773..1048 | 100 | -> | Plus |
2L | 755829..756080 | 1049..1300 | 100 | -> | Plus |
2L | 756668..757030 | 1301..1663 | 100 | -> | Plus |
2L | 757128..757431 | 1664..1967 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-16 16:30:30 Download gff for
BS27764.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 753119..753730 | 17..628 | 100 | -> | Plus |
arm_2L | 754487..754630 | 629..772 | 100 | -> | Plus |
arm_2L | 755021..755296 | 773..1048 | 100 | -> | Plus |
arm_2L | 755829..756080 | 1049..1300 | 100 | -> | Plus |
arm_2L | 756668..757030 | 1301..1663 | 100 | -> | Plus |
arm_2L | 757128..757431 | 1664..1967 | 100 | | Plus |
BS27764.pep Sequence
Translation from 16 to 1968
> BS27764.pep
MRIIQPVQGTRYGPWPAVGLRLVLALAWATSAAAAMESSAELQALGYEAI
RPGAASISTSSPSSSPPGESASTVTAGGTPIPPRSDWKYKRTKVKRRQQR
LNSHSNLPGSTNASHAHHLLNLPPRQRYLKVNQVFESERRMSPAEMQRNH
GKIVLLGLFELSTSRGPRPDGLSELGAATMAVEHINRKRLLPGYTLELVT
NDTQCDPGVGVDRFFHAIYTQPSTRMVMLLGSACSEVTESLAKVVPYWNI
VQVSFGSTSPALSDRREFPYFYRTVAPDSSHNPARIAFIRKFGWGTVTTF
SQNEEVHSLAVNNLVTELEAANISCAATITFAATDFKEQLLLLRETDTRI
IIGSFSQELAPQILCEAYRLRMFGADYAWILHESMGAPWWPDQRTACSNH
ELQLAVENLIVVSTHNSIVGNNVSYSGLNNHMFNSQLRKQSAQFHGQDGF
GSGYGSRISIAATQSDSRRRRRRGVGGTSGGHLFPEAISQYAPQTYDAVW
AIALALRAAEEHWRRNEEQSKLDGFDYTRSDMAWEFLQQMGKLHFLGVSG
PVSFSGPDRVGTTAFYQIQRGLLEPVALYYPATDALDFRCPRCRPVKWHS
GQVPIAKRVFKLRVATIAPLAFYTIATLSSVGIALAIAFLAFNLHFRKLK
*
BS27764.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:45:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GABA-B-R3-PG | 1305 | CG3022-PG | 1..650 | 1..650 | 3383 | 100 | Plus |
GABA-B-R3-PE | 1305 | CG3022-PE | 1..650 | 1..650 | 3383 | 100 | Plus |
GABA-B-R3-PD | 1305 | CG3022-PD | 1..650 | 1..650 | 3383 | 100 | Plus |
GABA-B-R3-PC | 650 | CG3022-PC | 1..650 | 1..650 | 3383 | 100 | Plus |
GABA-B-R3-PA | 1305 | CG3022-PA | 1..650 | 1..650 | 3383 | 100 | Plus |