BS27765.complete Sequence
515 bp assembled on 2011-09-22
GenBank Submission: KX806359
> BS27765.complete
GAAGTTATCAGTCGACATGGCCATCCTGCCGCTGAGGACGCAGGTGCGCG
GGCCAGCGCCCAGTGCGAATATTGAGAGCGACATCATTGATGAGTCACTG
TACTACTTCAAAGCCAATGTCTTCTTTCGCACGTACGAAATCAAGTCCGA
CGTGGATCGCGTGCTCATCTATGTGACGCTCTACATAACAGAGTGCCTCA
AGAAGCTCAATCGCTCCACGAGCAAGGCCCAGGGACAGCAGGACATGTAC
AGCCTGGCCATCTCCAAGTTCGACATTCCCGGCGATGCTGGCTTCCCATT
GAACGCCGTCTATGCCAAGCCGCAAACGGCCCAGGATGCGGATCTGATGC
GCCAGTACCTGCTGCAGCTGCGCCACGAAACCGGCAACCGGGTACTGGAG
AAGGTCTTCAACACCGAGGATGGCAAGCCCAATAAATGGTGGACCTGCTT
CGCGAAGAAAAAGTTCATGGAGAAGAGTCTGGCTGGACCTGGACAATAAA
AGCTTTCTAGACCAT
BS27765.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:45:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 534 | CG4560-PE | 50..534 | 15..499 | 2425 | 100 | Plus |
| Arpc3A-RC | 534 | CG4560-PC | 50..534 | 15..499 | 2425 | 100 | Plus |
| Arpc3B-RC | 474 | CG8936-PC | 37..468 | 53..493 | 415 | 73.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:45:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-RE | 1123 | CG4560-RE | 168..653 | 15..500 | 2430 | 100 | Plus |
| Arpc3A-RC | 814 | CG4560-RC | 168..653 | 15..500 | 2430 | 100 | Plus |
| Arpc3B-RC | 693 | CG8936-RC | 185..616 | 53..493 | 415 | 73.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:45:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 15835195..15835551 | 144..500 | 1785 | 100 | Plus |
| 3R | 32079331 | 3R | 15834956..15835086 | 15..145 | 655 | 100 | Plus |
| X | 23542271 | X | 17104648..17104808 | 493..333 | 310 | 79.5 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:45:08 has no hits.
BS27765.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:12 Download gff for
BS27765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RD | 291..771 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:01:36 Download gff for
BS27765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 170..650 | 17..497 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:25:48 Download gff for
BS27765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Arpc3A-RC | 170..650 | 17..497 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:25:48 Download gff for
BS27765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 15834958..15835086 | 17..145 | 100 | -> | Plus |
| 3R | 15835197..15835548 | 146..497 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:01:36 Download gff for
BS27765.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11660680..11660808 | 17..145 | 100 | -> | Plus |
| arm_3R | 11660919..11661270 | 146..497 | 100 | | Plus |
BS27765.pep Sequence
Translation from 16 to 498
> BS27765.pep
MAILPLRTQVRGPAPSANIESDIIDESLYYFKANVFFRTYEIKSDVDRVL
IYVTLYITECLKKLNRSTSKAQGQQDMYSLAISKFDIPGDAGFPLNAVYA
KPQTAQDADLMRQYLLQLRHETGNRVLEKVFNTEDGKPNKWWTCFAKKKF
MEKSLAGPGQ*
BS27765.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Arpc3A-PE | 177 | CG4560-PE | 18..177 | 1..160 | 834 | 100 | Plus |
| Arpc3A-PC | 177 | CG4560-PC | 18..177 | 1..160 | 834 | 100 | Plus |
| Arpc3B-PC | 157 | CG8936-PC | 1..156 | 1..159 | 666 | 76.1 | Plus |
| Arpc3B-PB | 157 | CG8936-PB | 1..156 | 1..159 | 666 | 76.1 | Plus |
| Arpc3B-PA | 174 | CG8936-PA | 18..173 | 1..159 | 666 | 76.1 | Plus |
