BS27770.complete Sequence
3254 bp assembled on 2011-11-14
GenBank Submission: KX803827
> BS27770.complete
GAAGTTATCAGTCGACATGGCCTCTAAGGCCATTTGGTTGACTATACTCC
GCTTTATGGGCGACTTGCCGGATGTTGTTTCCTCGCCTACTCTTCACGTA
TTCGATAATGAAAACTTGATGAGTGATTTGGCAAGCCTCTTGAACACTTC
TGATTCCTATAAGCCTCGCTTATTTGTGCGCCAATCCCAAAGACGTATCC
CAAAGCCTTTGGCTAGTGGTGAGAAGGAAGCCCAGGAATTCTATCAACAC
TGGCTCAACGTTCCCACAAGTCACCTGGAGAAAATTCACTTCATCATAGG
TCATGGTATAATAAAGAATAGCTTACGAGACGAAATCTTGGCCCAGATCT
GCAAGCAGCTATATCTTAACCCAAGTCGGAGCTCCTACTCCCGCGGATGG
TTGCTCCTTTCGCTATGCCTCAGCTGCTTTCCACCCAGCAAGGAGTTTGA
GCCACACTTGCGCAGTTTCATGAAGCAGGGAACTGCCCAACTGCAGGCCA
CTCCATCCCTGCAGCGATTGGAGCGAACCCTGGTCAATGGACCACGCTGT
CAGCCACCTTCGTTATTTGAGCTCCACGCAATCCGCGGTCGCCACCCGCT
TAGGTTGGACATTCACCTGATGGATGGGCAGCAGAGAAGATTGCAGGTGG
ATGCGGCCAGTACAGCTCGAGAGGCAGTCAATCAACTTTGTCAGGGTATG
GGGCTAACCGACACCTTTGGCTTTGGATTGGTGATGTCATTGAATGGGAA
GCTAATGCCGCTGGGAGCAGGTCAGGAGCATGTCCTGGATGCCATTTCGG
AGTGCGAGCAACGTCAGCTGGATGCACCTTGGAAACTATACATCCGAAAG
GAAATGTTTGCCACTTGGTATGATCCCTCGATGGATCCCAAGGCCACTCA
ACTTATATACAAGCAAATTCTAAACGGGTTGAAGTGCGGAGAGTATCGAT
GTCGCTCCGAGAAGGACATAGCAATGGTGTGTGCTCTGGCCTGCTTTGTA
GAATATGGACCTGGGGAGATTCTTCGATTGAAGCCATCGGAGATCACTGC
ATTTGTCCCAAGTGATCTTCTAGCTCCCGGCGAGCGAGCCATTGAGAACT
GGAGTCGCCTAATAGCTGCCACCTACGAGAAGAGCTCTTATGTCAAAGAA
GAACAGAATGACCTGCTATTGGAGGCGCAGAAGAGAGCCAAGGAGGATAT
ATGTCTGTTTGCACATCTCTCCTGGCCTATGAGGCACTCCCGACTGTTTG
AAGTGGTTCGCAAAGAGGGACCAAAACTCCAAAGCGATGAACTTATGCTG
GGCATTAATTCCGCGGGCCTTTTCCTTATCGACGAAACCGAACAGGTGCT
GGCATCCTGTTGTTTTAGCGAGGTGCTGAAAGTGCACGTGGAATCAGATG
ATAAACTGCATGTTATGACCTTCCAACACGTCAATTTTGTGCTGCAGTGC
AGCTCTGCTCAGGATGCCAACGAGGTGATAAACTATATGCTGGATAATCT
CCGACAGCGTTCAAGCTATGGCGTAGCTCTTGATCCGGTCGTAGAGGGGG
ATCTAGAGGATTGTCTAGTGCTAAACCCCGGTGACCTAATCGAATTCGAG
GCAGGTGTAACAGGTGCCCAGTTAATGGCTGGTAATGCACAAGACTGCTA
CAGGGGATGTGTCAATGGCCAGTGGGGTCAGTTTTTAGCTGGAAATGTTC
GCGTTTTGGCCACGCTCACCAAGCCGAGTGAAAAACTTCAAGATATCCTC
CGAGAAGGCCGATTTCAAGAACCCCCGAAACCAACTCCAAGAGCCAATTA
CTCTCGTCGTCGTCAACACAATATCTCTCAGCTGGCTGAGAGCCACTTTA
GGGAGCCATTGGACTCCGATAAGGCACCACTATCAAAGTTTTCACCTGAG
CCTCTGAAAGCCCCGCTGCTCAAAGCTGTTGTTAAGGTACCGCCACTTTT
CCAGCAGGCATTGGTTATGCATCATCATATTCTTAAGTACATGGGTGACA
TAGCAAGGAGCAATCTACCGGTCAACACGGACCTCATTTTCCAGCCAGCA
CTGCAGCATCCGCTGTTGTGTGACGAACTCTACTGCCAGCTGATGAAGCA
ACTGAGCGATAATCCCTCCAGTGAAAGCGAGAAGCGGGGCTGGGACCTGC
TTTACTTGGCCACGGGCTTGGTGGCTCCCAGTGTCTTGGTCATGAGGGAG
CTGATCATACTACTGCGCATGCGTGCAGACGCCCTGGCCGATGCTTGCCT
GAAGCGACTGAAGCGATCCTTGGCACAGGGCCAGCGAAAAAAGGCACCAC
ATCTCATAGAGGTCGAGGGAATTCAACAGCGATGCCTGCATATCTACCAC
AAGATATATTTCCCCGACGATACGGTTGAGGCTTTCGAGATTGAATCACA
CACCCGGGGAGCAGAGCTCATAGCGGACATAGCCCAGAGATTGGAGCTCA
AATCACCTGTGGGTTATAGTATTTTCTTGAAGACAGGCGACAGGGTCTAT
GCTATGCCGGAAGAGGAGTTCGTTTTTGATTTCATCACCCAACTCATCTA
CTGGCTAAGACAGCAGAGGACCATACGCTCCATATCCGATGGCCAATACC
AACTGCACTTCATGAGAAAGTTATGGTTAAACAACCATCCAGGCGAAGAC
CTCAATGGAGATATGATCTTTAGCTATCCCCAAGAGCTGCACAAATACTT
GAAGGGCTACTATCCCATCGATTGCGAGCAGGCCTCGCGTTTGGCAATTC
TTGTGTACAGTGCAGATCATGACGTTAGCTTGCAGCGGCTGCCCGAAGTG
CTGACACGTTTAATTCCTGAAGACCTAATACCGCTTCAAACGGTGGCCGA
ATGGAGGCAGCAGATCCTGCCCAAGGTCCACCGCGATCATTTAACGGAAG
ATCACGCCAAGATTTTGTTCCTTCAAGAGCTGTCCCATTTCGCTTGCTTC
GGTTCCACATTCTTTGTGGTGAAGCAACAAAATGACGATGCCCTTCCCGA
AACTCTTTTAATCGCAATTAACAGCACAGGTTTCCATATGCTGGATCCGA
CAACTAAGGAGATCCTTCGCAGCTATGAATACTCCCAGTTGGGTATTTGG
AGCTCGGGTAAGAACCACTTCCACATTCGTTTTGGTAACATGATCGGAGC
ATCGAAGCTGCTGTGCAGCACCACCCAAGGATACAAAATGGACGATTTGC
TGGCCTCTTATGTTAAGTATTTTAATGAACACGAATAAAAGCTTTCTAGA
CCAT
BS27770.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:46:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-RA | 6366 | CG6976-PA | 3145..6366 | 17..3238 | 16110 | 100 | Plus |
| Myo28B1-RB | 6369 | CG6976-PB | 3148..6369 | 17..3238 | 16110 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:46:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-RA | 6588 | CG6976-RA | 3323..6545 | 17..3239 | 16115 | 100 | Plus |
| Myo28B1-RB | 6443 | CG6976-RB | 3178..6400 | 17..3239 | 16115 | 100 | Plus |
| CG18585-RB | 1423 | CG18585-RB | 1318..1423 | 3239..3134 | 530 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:46:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 7686387..7687923 | 327..1863 | 7685 | 100 | Plus |
| 2L | 23513712 | 2L | 7688163..7689416 | 1986..3239 | 6270 | 100 | Plus |
| 2L | 23513712 | 2L | 7686025..7686325 | 27..327 | 1505 | 100 | Plus |
| 2L | 23513712 | 2L | 7687974..7688097 | 1864..1987 | 620 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:46:12 has no hits.
BS27770.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-11-14 09:53:51 Download gff for
BS27770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RE | 294..3513 | 17..3236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:22 Download gff for
BS27770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RB | 3178..6397 | 17..3236 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:03:26 Download gff for
BS27770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Myo28B1-RB | 3178..6397 | 17..3236 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:03:26 Download gff for
BS27770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 7686025..7686325 | 27..327 | 100 | -> | Plus |
| 2L | 7686388..7687923 | 328..1863 | 100 | -> | Plus |
| 2L | 7687974..7688097 | 1864..1987 | 100 | -> | Plus |
| 2L | 7688165..7689413 | 1988..3236 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:22 Download gff for
BS27770.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 7686025..7686325 | 27..327 | 100 | -> | Plus |
| arm_2L | 7686388..7687923 | 328..1863 | 100 | -> | Plus |
| arm_2L | 7687974..7688097 | 1864..1987 | 100 | -> | Plus |
| arm_2L | 7688165..7689413 | 1988..3236 | 100 | | Plus |
BS27770.pep Sequence
Translation from 16 to 3237
> BS27770.pep
MASKAIWLTILRFMGDLPDVVSSPTLHVFDNENLMSDLASLLNTSDSYKP
RLFVRQSQRRIPKPLASGEKEAQEFYQHWLNVPTSHLEKIHFIIGHGIIK
NSLRDEILAQICKQLYLNPSRSSYSRGWLLLSLCLSCFPPSKEFEPHLRS
FMKQGTAQLQATPSLQRLERTLVNGPRCQPPSLFELHAIRGRHPLRLDIH
LMDGQQRRLQVDAASTAREAVNQLCQGMGLTDTFGFGLVMSLNGKLMPLG
AGQEHVLDAISECEQRQLDAPWKLYIRKEMFATWYDPSMDPKATQLIYKQ
ILNGLKCGEYRCRSEKDIAMVCALACFVEYGPGEILRLKPSEITAFVPSD
LLAPGERAIENWSRLIAATYEKSSYVKEEQNDLLLEAQKRAKEDICLFAH
LSWPMRHSRLFEVVRKEGPKLQSDELMLGINSAGLFLIDETEQVLASCCF
SEVLKVHVESDDKLHVMTFQHVNFVLQCSSAQDANEVINYMLDNLRQRSS
YGVALDPVVEGDLEDCLVLNPGDLIEFEAGVTGAQLMAGNAQDCYRGCVN
GQWGQFLAGNVRVLATLTKPSEKLQDILREGRFQEPPKPTPRANYSRRRQ
HNISQLAESHFREPLDSDKAPLSKFSPEPLKAPLLKAVVKVPPLFQQALV
MHHHILKYMGDIARSNLPVNTDLIFQPALQHPLLCDELYCQLMKQLSDNP
SSESEKRGWDLLYLATGLVAPSVLVMRELIILLRMRADALADACLKRLKR
SLAQGQRKKAPHLIEVEGIQQRCLHIYHKIYFPDDTVEAFEIESHTRGAE
LIADIAQRLELKSPVGYSIFLKTGDRVYAMPEEEFVFDFITQLIYWLRQQ
RTIRSISDGQYQLHFMRKLWLNNHPGEDLNGDMIFSYPQELHKYLKGYYP
IDCEQASRLAILVYSADHDVSLQRLPEVLTRLIPEDLIPLQTVAEWRQQI
LPKVHRDHLTEDHAKILFLQELSHFACFGSTFFVVKQQNDDALPETLLIA
INSTGFHMLDPTTKEILRSYEYSQLGIWSSGKNHFHIRFGNMIGASKLLC
STTQGYKMDDLLASYVKYFNEHE*
BS27770.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Myo28B1-PA | 2121 | CG6976-PA | 1049..2121 | 1..1073 | 5621 | 100 | Plus |
| Myo28B1-PB | 2122 | CG6976-PB | 1050..2122 | 1..1073 | 5621 | 100 | Plus |
| ck-PD | 2167 | CG7595-PD | 1027..2151 | 1..1066 | 2030 | 39.4 | Plus |
| ck-PC | 2167 | CG7595-PC | 1027..2151 | 1..1066 | 2030 | 39.4 | Plus |
| ck-PB | 2167 | CG7595-PB | 1027..2151 | 1..1066 | 2030 | 39.4 | Plus |
