BS27775.complete Sequence
1454 bp assembled on 2013-11-25
GenBank Submission: KX801113
> BS27775.complete
GAAGTTATCAGTCGACATGCATTATCAAAACAATAATAATAATAATAATA
ATGTCATTAATCTGAGATCCCCTGCAATTCCACACAGAATTTCCCCGGAA
TCCGTAGCAACTACAAATTCTTCAAACATGGGCCTGAACATACCCATGTT
GATAGCGAGCAGCCAGACGCTGGACAGTTGGAATACGGCGGGTCAGTACT
CGCCACCGATATCGGGATCCGGCGGCGGTGGATCCGAGCGAGGAGGAAGT
GCTGGAGGCGGCGGAGTGCCGCCACAGCAACTGCGAGTACCGCTGCCGAT
GAGCTATCATGGCGGAGCTGGTGGTGGAAGCAGCAGTAGTGATTTCCAGC
AGAGTCCCCTGAAGACCATGGACACCTCGGACAATGAGGATAATAACAAT
ACCAAGGAGGATGTGGCGGCGGCAGCGGCACTGGGACAACTGGCTGCCAA
GGTCGAGCTGCGATCGCCGGCGGGCGCAGGTCCTGGCGGTGGCGGTGGTT
CGAGCAGTAGGGAAGCCAATGATCCAACCAGCGATCCCATCAAGCCCGAC
CGCACTCTAAGCGAAGCTGGCAGCAGTCCCATACCGAATACCAATATGCA
CGAGGCGCACAAGAATCACCTGCTAAACAGTCCCGCCGGCGGAAGGTCAG
TCACGCCGCGGCAGGCGCATGAGCAGCTGCATCACCATCCGCACACGCAA
CACCACCTGCAACAGCAGCAGCAACAACTGCAGCAGCAGCATCAGCAGTT
GCAGCAGCAACAACTGCAACAGCATCAGCAACAGCAGCAGCTGCATCACG
GCCACGAGGAATTGGACATCAAGCAGGAGTTGGTGGACTATTTCCATGGT
CAGGCGGCTGGCGGTGGTGGTGGTGGTGGTGGTGGTGTTGTTGGTCCTGC
ACCACCGCCACCACCCGAATCGCATCGTTCCTATAGCTCAGCGGGCGAGG
AGAGTCGGCTCCAATTGGTGGACATGGCCCAGGACCTGAGAGTCGCCCAG
GCGAAGGCCAATTTCGGTGCTTTCATCCTGCCACCCAGAGGCAGTGATGC
CAGCACACCCGCCATGCCCTTAAATATGCGAAAACTGACCGGCGCCGGCA
GTGCGGGTCATATGCTAATGAATTCGCTGCTGGGCTCCAGGGAGAGCATG
TCGGATGGCGAGGAACCCGATCCGGATAACGATGAGGCCACCGAATCGGC
CGCCAGTCCGGGTCACATCAAGAGCAGCGTTTCCGCCCAGGCGGCCGTTG
CAGCGTCTGCCTTTTATGCCGAGTCCCTGAATCGAGATGATTGCGATTTT
ATTGGATCGAATGTGTCCCTCAAACTGCGGACCATGGATCGCACGCAACG
AATCATTGCGGAGAAGCTAATCAGCGAGGTGTTGTACTATGGGCAATTCA
ACGAGCTGGAACGCTCGGCGCGGATACAGCCCAAGTGAAAGCTTTCTAGA
CCAT
BS27775.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 14:36:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RC | 1422 | CG5953-PC | 1..1422 | 17..1438 | 7110 | 100 | Plus |
| CG5953-RD | 2106 | CG5953-PD | 796..2106 | 128..1438 | 6555 | 100 | Plus |
| CG5953-RB | 2106 | CG5953-PB | 796..2106 | 128..1438 | 6555 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 14:36:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-RC | 2535 | CG5953-RC | 94..1519 | 13..1438 | 7115 | 99.9 | Plus |
| CG5953-RD | 4576 | CG5953-RD | 1208..2518 | 128..1438 | 6555 | 100 | Plus |
| CG5953-RB | 3796 | CG5953-RB | 1470..2780 | 128..1438 | 6555 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 14:36:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16510136..16511446 | 1438..128 | 6555 | 100 | Minus |
| 2L | 23513712 | 2L | 16519970..16520084 | 127..13 | 560 | 99.1 | Minus |
| 2R | 25286936 | 2R | 13823840..13823954 | 793..680 | 210 | 80.9 | Minus |
| X | 23542271 | X | 21333282..21333375 | 789..696 | 185 | 79.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 14:36:10 has no hits.
BS27775.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-11-25 14:49:39 Download gff for
BS27775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 98..1518 | 17..1437 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 15:18:04 Download gff for
BS27775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5953-RC | 98..1518 | 17..1437 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 15:18:04 Download gff for
BS27775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16510137..16511446 | 128..1437 | 100 | <- | Minus |
| 2L | 16519970..16520080 | 17..127 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-11-25 14:49:39 Download gff for
BS27775.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16510137..16511446 | 128..1437 | 100 | <- | Minus |
| arm_2L | 16519970..16520080 | 17..127 | 100 | | Minus |
BS27775.pep Sequence
Translation from 16 to 1437
> BS27775.pep
MHYQNNNNNNNNVINLRSPAIPHRISPESVATTNSSNMGLNIPMLIASSQ
TLDSWNTAGQYSPPISGSGGGGSERGGSAGGGGVPPQQLRVPLPMSYHGG
AGGGSSSSDFQQSPLKTMDTSDNEDNNNTKEDVAAAAALGQLAAKVELRS
PAGAGPGGGGGSSSREANDPTSDPIKPDRTLSEAGSSPIPNTNMHEAHKN
HLLNSPAGGRSVTPRQAHEQLHHHPHTQHHLQQQQQQLQQQHQQLQQQQL
QQHQQQQQLHHGHEELDIKQELVDYFHGQAAGGGGGGGGGVVGPAPPPPP
ESHRSYSSAGEESRLQLVDMAQDLRVAQAKANFGAFILPPRGSDASTPAM
PLNMRKLTGAGSAGHMLMNSLLGSRESMSDGEEPDPDNDEATESAASPGH
IKSSVSAQAAVAASAFYAESLNRDDCDFIGSNVSLKLRTMDRTQRIIAEK
LISEVLYYGQFNELERSARIQPK*
BS27775.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 09:47:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5953-PC | 473 | CG5953-PC | 1..473 | 1..473 | 2471 | 100 | Plus |
| CG5953-PD | 701 | CG5953-PD | 266..701 | 38..473 | 2274 | 100 | Plus |
| CG5953-PB | 701 | CG5953-PB | 266..701 | 38..473 | 2274 | 100 | Plus |
| CG5953-PA | 701 | CG5953-PA | 266..701 | 38..473 | 2274 | 100 | Plus |
| Sp1-PB | 520 | CG1343-PB | 275..486 | 32..280 | 209 | 31 | Plus |
