BS27779.complete Sequence
395 bp assembled on 2011-09-22
GenBank Submission: KX806105
> BS27779.complete
GAAGTTATCAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCA
CCAAGAAATTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCG
GCACAGAATCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCA
AGGTGTCTTCTTTCGCAAGGCCATTGAGCTGGGCATAACTGGCTGGTGCA
TGAACACAACTCAAGGAACGGTTCAGGGAATGCTCGAAGGATCCTTGGAC
CAAATGACTGATATGAAATACTGGCTGCAGCACAAGGGAAGTCCTCGTTC
GGTGATCGAAAAGGCTGTATTCTCCGAGAATGAACCACTGCCCATCAACA
ACTTTAAGATGTTCTCGATTCGTCGCTAGAAGCTTTCTAGACCAT
BS27779.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34161-RB | 363 | CG34161-PB | 1..363 | 17..379 | 1815 | 100 | Plus |
CG34161-RC | 378 | CG34161-PC | 1..378 | 17..379 | 1630 | 96 | Plus |
CG34161-RA | 378 | CG34161-PA | 1..378 | 17..379 | 1630 | 96 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34161-RB | 553 | CG34161-RB | 66..428 | 17..379 | 1815 | 100 | Plus |
CG34161-RC | 563 | CG34161-RC | 66..443 | 17..379 | 1630 | 96 | Plus |
CG34161-RA | 577 | CG34161-RA | 66..443 | 17..379 | 1630 | 96 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10581500..10581637 | 154..17 | 690 | 100 | Minus |
2L | 23513712 | 2L | 10581091..10581205 | 379..265 | 575 | 100 | Minus |
2L | 23513712 | 2L | 10581260..10581358 | 265..167 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 08:15:58 has no hits.
BS27779.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:52 Download gff for
BS27779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34161-RB | 26..388 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:51 Download gff for
BS27779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34161-RB | 66..428 | 17..379 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:23 Download gff for
BS27779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG34161-RB | 66..428 | 17..379 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:23 Download gff for
BS27779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10581091..10581205 | 265..379 | 100 | <- | Minus |
2L | 10581261..10581355 | 170..264 | 100 | <- | Minus |
2L | 10581424..10581440 | 153..169 | 100 | <- | Minus |
2L | 10581502..10581637 | 17..152 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:51 Download gff for
BS27779.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10581091..10581205 | 265..379 | 100 | <- | Minus |
arm_2L | 10581261..10581355 | 170..264 | 100 | <- | Minus |
arm_2L | 10581424..10581440 | 153..169 | 100 | <- | Minus |
arm_2L | 10581502..10581637 | 17..152 | 100 | | Minus |
BS27779.pep Sequence
Translation from 16 to 378
> BS27779.pep
MSSQIKKSKTTTKKLVKSSPKAQLPKAAAQNQIFSCQFEVFGHVQGVFFR
KAIELGITGWCMNTTQGTVQGMLEGSLDQMTDMKYWLQHKGSPRSVIEKA
VFSENEPLPINNFKMFSIRR*
BS27779.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG34161-PB | 120 | CG34161-PB | 1..120 | 1..120 | 623 | 100 | Plus |
CG34161-PC | 125 | CG34161-PC | 1..125 | 1..120 | 607 | 96 | Plus |
CG34161-PA | 125 | CG34161-PA | 1..125 | 1..120 | 607 | 96 | Plus |
CG18371-PA | 110 | CG18371-PA | 7..99 | 32..119 | 231 | 50.5 | Plus |
CG11052-PD | 149 | CG11052-PD | 29..146 | 6..118 | 221 | 39 | Plus |