Clone BS27779 Report

Search the DGRC for BS27779

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG34161-RB
Protein status:BS27779.pep: full length peptide match
Sequenced Size:395

Clone Sequence Records

BS27779.complete Sequence

395 bp assembled on 2011-09-22

GenBank Submission: KX806105

> BS27779.complete
GAAGTTATCAGTCGACATGAGCAGTCAAATTAAAAAGTCCAAAACGACCA
CCAAGAAATTGGTGAAATCATCTCCGAAAGCTCAACTTCCAAAAGCTGCG
GCACAGAATCAAATTTTTAGTTGCCAATTCGAGGTGTTTGGTCATGTGCA
AGGTGTCTTCTTTCGCAAGGCCATTGAGCTGGGCATAACTGGCTGGTGCA
TGAACACAACTCAAGGAACGGTTCAGGGAATGCTCGAAGGATCCTTGGAC
CAAATGACTGATATGAAATACTGGCTGCAGCACAAGGGAAGTCCTCGTTC
GGTGATCGAAAAGGCTGTATTCTCCGAGAATGAACCACTGCCCATCAACA
ACTTTAAGATGTTCTCGATTCGTCGCTAGAAGCTTTCTAGACCAT

BS27779.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:15:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RB 363 CG34161-PB 1..363 17..379 1815 100 Plus
CG34161-RC 378 CG34161-PC 1..378 17..379 1630 96 Plus
CG34161-RA 378 CG34161-PA 1..378 17..379 1630 96 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:16:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-RB 553 CG34161-RB 66..428 17..379 1815 100 Plus
CG34161-RC 563 CG34161-RC 66..443 17..379 1630 96 Plus
CG34161-RA 577 CG34161-RA 66..443 17..379 1630 96 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:15:56
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10581500..10581637 154..17 690 100 Minus
2L 23513712 2L 10581091..10581205 379..265 575 100 Minus
2L 23513712 2L 10581260..10581358 265..167 495 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:15:58 has no hits.

BS27779.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:52 Download gff for BS27779.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 26..388 17..379 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:56:51 Download gff for BS27779.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 66..428 17..379 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:14:23 Download gff for BS27779.complete
Subject Subject Range Query Range Percent Splice Strand
CG34161-RB 66..428 17..379 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:14:23 Download gff for BS27779.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10581091..10581205 265..379 100 <- Minus
2L 10581261..10581355 170..264 100 <- Minus
2L 10581424..10581440 153..169 100 <- Minus
2L 10581502..10581637 17..152 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:56:51 Download gff for BS27779.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10581091..10581205 265..379 100 <- Minus
arm_2L 10581261..10581355 170..264 100 <- Minus
arm_2L 10581424..10581440 153..169 100 <- Minus
arm_2L 10581502..10581637 17..152 100   Minus

BS27779.pep Sequence

Translation from 16 to 378

> BS27779.pep
MSSQIKKSKTTTKKLVKSSPKAQLPKAAAQNQIFSCQFEVFGHVQGVFFR
KAIELGITGWCMNTTQGTVQGMLEGSLDQMTDMKYWLQHKGSPRSVIEKA
VFSENEPLPINNFKMFSIRR*

BS27779.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG34161-PB 120 CG34161-PB 1..120 1..120 623 100 Plus
CG34161-PC 125 CG34161-PC 1..125 1..120 607 96 Plus
CG34161-PA 125 CG34161-PA 1..125 1..120 607 96 Plus
CG18371-PA 110 CG18371-PA 7..99 32..119 231 50.5 Plus
CG11052-PD 149 CG11052-PD 29..146 6..118 221 39 Plus