Clone BS27787 Report

Search the DGRC for BS27787

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:277
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG34302-RB
Protein status:BS27787.pep: full length peptide match
Sequenced Size:545

Clone Sequence Records

BS27787.complete Sequence

545 bp assembled on 2011-09-22

GenBank Submission: KX806054

> BS27787.complete
GAAGTTATCAGTCGACATGGATCCACTCCGCCGTAATCCTCTTTTGGAAA
TTACCAAATGTGAGATGTGCTCCAATTTGGTATACCATTTTCCGACTGGA
TTGTGTGCCCGCTGCTTAACTCTTTGGGCCGGAAAGAAACCAATGGACGG
ACTGAGACTGACCGTGGACCAATCGAAGGCTTTCCTTGTGAACATTGCTC
GCTGTTCGGATGCCCAGGATAAGAGCCATATGGACCCCACCTTTCAACGC
GTGATTGCCGAGGTGAGATTGCAGCGCCAACAGAAACTTGAGCTGTTCCA
GAAGATTCGCCAGCAGTTACAGCTTTCCGTACTCACCGGTTCCTTCTATG
ACAAAAATCCAAAATACGAAGTCAATGAGGACTATTGGAATATACCGGAT
ATCGTCGATGCAGACATGCTGATGTTTCAGAAAAATATTGACCTGCTTGC
AGATATACCCACCATTTCGTCAGAGATCAATGACGAAAATAAATACAATA
AGCGCGAAAATAGAAAACGAAATTTGTAGAAGCTTTCTAGACCAT

BS27787.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
CG34302-RB 513 CG34302-PB 1..513 17..529 2565 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG34302-RB 825 CG34302-RB 213..725 17..529 2565 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9823099..9823611 529..17 2565 100 Minus
Blast to na_te.dros performed on 2014-11-27 08:18:28 has no hits.

BS27787.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:55 Download gff for BS27787.complete
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 213..725 17..529 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:13 Download gff for BS27787.complete
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 213..725 17..529 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:27 Download gff for BS27787.complete
Subject Subject Range Query Range Percent Splice Strand
CG34302-RB 213..725 17..529 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:27 Download gff for BS27787.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9823099..9823611 17..529 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:13 Download gff for BS27787.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5648821..5649333 17..529 100   Minus

BS27787.pep Sequence

Translation from 16 to 528

> BS27787.pep
MDPLRRNPLLEITKCEMCSNLVYHFPTGLCARCLTLWAGKKPMDGLRLTV
DQSKAFLVNIARCSDAQDKSHMDPTFQRVIAEVRLQRQQKLELFQKIRQQ
LQLSVLTGSFYDKNPKYEVNEDYWNIPDIVDADMLMFQKNIDLLADIPTI
SSEINDENKYNKRENRKRNL*

BS27787.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG34302-PB 170 CG34302-PB 1..170 1..170 896 100 Plus