BS27794.complete Sequence
926 bp assembled on 2011-09-22
GenBank Submission: KX800867
> BS27794.complete
GAAGTTATCAGTCGACATGGGCGCCGTGCAGCCAGGAGGAGTTGTGACCG
TTGACAACACCTGGGTGCACTCGTCTCCATACAGCCCCCTGCCCCCATAC
GCGGTTATCGGTGGCCATGACTCGGACCGCACGCCCATCTATGTGGGTCG
ATCCTTTCACGAAGGCGAGAATCTTCCCGCCAAGGTCGTACCGAGCAAGG
GATGCGCCTATGTGGCCTACGGTGGTGCGGAGCACACGAAGACGCACTAC
GAGGTGCTGGTGGGTCAGGGATTTGCCTGGGTGCCCAGTTCCAGCGGTGG
AGTGCCACCGAATGCGGTGAGGAGCGGAACGACGCGAACGGGCGAGCCGC
TCTATGTGGGACGCGGACATCATGCCGGAAGCTTGACTGTGGGCAAAGTT
CATCCATCGCACGGCTGCCTATACATTCCATTTGGCGGCCAGGAGGTGCG
CATCAACACCTACGAGGTGCTCATCAAGCAGCAGCACGACGTCTGGGTAC
CGGCCTCGCCCAGTTACACTCCTCCGGGCGCAGTGATCGCCGGACACGAC
TCCGACCGTACTCCCATTTACGCCGGAAGGGCAATGCACGAGGGTGAAAT
GCTGCCTGCCAAGGTGGTGCCGAGCAAGGGAACCGCCTACGTTTGCTTCG
GCGGATACGAATTCCAGAAGCCCAGCTACGAGGTGCTCACTGGCTACGGA
TATGTATGGATGAATTGCGGCCACAGCATTCCACCAAACGCCGTAACCAC
GGGTCGTGCTCGCAATGGAGAGCTGCTGTACTATGGGCGAGGACACTACC
AGGGCAGTTTGACACCGGGTCTGATCTCGGCCAGCCAGCGTTGCCTCTAT
ATTCCGTACGGAGGTCGGGAGATTCGCATCAACTCGTACGAGATTCTCTG
CAGACAATAAAAGCTTTCTAGACCAT
BS27794.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RC | 894 | CG44250-PC | 1..894 | 17..910 | 4470 | 100 | Plus |
| CG44250-RB | 861 | CG44250-PB | 4..861 | 53..910 | 4290 | 100 | Plus |
| CG32633-RB | 858 | CG32633-PB | 754..824 | 380..450 | 190 | 84.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-RC | 1100 | CG44250-RC | 118..1011 | 17..910 | 4470 | 100 | Plus |
| CG44250-RB | 1067 | CG44250-RB | 121..978 | 53..910 | 4290 | 100 | Plus |
| CG32633-RB | 956 | CG32633-RB | 794..864 | 380..450 | 190 | 84.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:18:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12950493..12951350 | 910..53 | 4290 | 100 | Minus |
| X | 23542271 | X | 13562712..13562782 | 380..450 | 190 | 84.5 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:18:47 has no hits.
BS27794.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:40:56 Download gff for
BS27794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3884-RC | 111..1002 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:57:19 Download gff for
BS27794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 118..1009 | 17..908 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:15:34 Download gff for
BS27794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG44250-RC | 118..1009 | 17..908 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:15:34 Download gff for
BS27794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12950495..12951349 | 54..908 | 100 | <- | Minus |
| 2R | 12951846..12951880 | 17..53 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:57:19 Download gff for
BS27794.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8838000..8838854 | 54..908 | 100 | <- | Minus |
| arm_2R | 8839351..8839385 | 17..53 | 94 | | Minus |
BS27794.pep Sequence
Translation from 16 to 909
> BS27794.pep
MGAVQPGGVVTVDNTWVHSSPYSPLPPYAVIGGHDSDRTPIYVGRSFHEG
ENLPAKVVPSKGCAYVAYGGAEHTKTHYEVLVGQGFAWVPSSSGGVPPNA
VRSGTTRTGEPLYVGRGHHAGSLTVGKVHPSHGCLYIPFGGQEVRINTYE
VLIKQQHDVWVPASPSYTPPGAVIAGHDSDRTPIYAGRAMHEGEMLPAKV
VPSKGTAYVCFGGYEFQKPSYEVLTGYGYVWMNCGHSIPPNAVTTGRARN
GELLYYGRGHYQGSLTPGLISASQRCLYIPYGGREIRINSYEILCRQ*
BS27794.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:17:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG44250-PC | 297 | CG44250-PC | 1..297 | 1..297 | 1633 | 100 | Plus |
| CG44250-PB | 286 | CG44250-PB | 1..286 | 12..297 | 1574 | 99.7 | Plus |
| CG13321-PB | 286 | CG13321-PB | 3..285 | 13..296 | 878 | 56.5 | Plus |
| CG13321-PA | 286 | CG13321-PA | 3..285 | 13..296 | 878 | 56.5 | Plus |
| CG32633-PB | 285 | CG32633-PB | 3..284 | 13..296 | 734 | 49.8 | Plus |
