BS27807.complete Sequence
2390 bp assembled on 2011-12-14
GenBank Submission: KX801877
> BS27807.complete
GAAGTTATCAGTCGACATGCGGATAAATCACCAATGGATATACTATGCGA
TCTTGTCTCTCTGCTGGTTTAATAAAGCTACTCTGGGCGCCATTCTGGAC
TCACGTTGTTACCTGGAGGGCGGAGGTTCCGCGGAAAGTTTTCTTGCCAC
CGAGGATTTGGCGGTGGGCTCCATAATCGGCAAGCTGCGGATCAATGGGG
ATGCCAATGCCGAAACAGGCGACATCAATCTTTCATTGAGGGAAAAGAAT
GCACCAGTTGAGATTCATCCCGGCACCAAGGAGCTAGCCCTATCGGTGGA
ACTGGACAAGGAGGGTGTGAGAGGACCATCGTCCATTTACGTGAATGTGA
TCTGCATACGACGGCATTCAACGGATCCGAGCTTCGTCATTCCCGTTAAC
GTGCGAGTAACTGATGTGAATGACAATGCCCCCCAGTGGATCGGAACGCC
CTACACTCTAACTCTTTCGGAGGTGACCGTTCCGGGCACTAGAATCCTGC
AGGGCGCCCGTGCCGAGGATGCCGACCAACCGGGTCCCTTCTCTACGGTG
GAGTACCAGGTGCTGCCAGGACCGTACTCGGAGTACGTGCAGTTTCTCAA
TCCTCTGGAAGGCACGCTGGTGCTAAAGAAAGCCCTCGACTACGAACAGC
TTCAGAATTTCACGGTGAAGCTGAGGGCGCAGGATCAGGGAACACCGCCA
CGTCACTCGGACACGTTGCTGCGGGTGGTCATCACGGATGCGGATGATCA
GAACCCAAAGTTCCAGCGAGAGTCCTACAGCGCTGAGATACCAGCGGATG
GTAGGCCAGGAGAGCTGCGCATGCGGCCGGAGCCCCTGAAGGCGGTGGAT
CAGGACGAGGGTATTTGTGCGCCCATTCAGTACACGATAGTCCAGTCGCA
GGATGCCAAGTACTTCCGCATCCATCCGCACAATGGAGCTATTAGCCTGC
TGACACCCATCGGATATGCGGATGTGGCCAATGGGGCAACGTTGGTGGTG
AAGGCCACGCAGATCGACAATCCAGATCGTTATGCCTTGACCACTGTCCA
GTTGACGCGACCTGGAAGTCACAGTGATTTGAGCACTCTGGCCTTCGTCC
AGAAGCGATTCGTGATGCGCATTCGCGAGGATACGGCAGTTGGGAATCGG
ATTCTAGCACTGCCCACCAATAAGCCCGGCAAACATCTCAAGTACGTCAT
TCCCGATCCCGTAAATTCGCAGTTCTTTAGCGTAGGATCGCTGGGAGAAC
TTGTGCTAGCCAAGCCACTCGACTACGAGAAGATGACCAAGCACGAGTTC
CAGGTCCTAGCCACCGATGGCATGACCAACAGCACCGCGGAACTTACACT
GGAGGTGATTGACGTAAATGACTGGGAACCTCGGTTCCGGGAAACGCACT
ACGAGTTCATGGTGCCCAAAAGCTCCCTGCAATCTCGAGCGGATTCCTTT
GAGGGCGTGCTCATCGGCAAGGTTGAGGCTGCTGATGGGGATCGTAATGA
CAAACTGGAACTCTCGCTGCGTGGTCAGCACGCTGGACTGTTTGAAATTG
ATTCCACTGGAAATATCTACATGCGTCCGGAGCAGCTACAGAGTCTCAAC
GAGTCCACGGTCCATCTGATAGCCATCGCCACGGACACGGGCGTTCCACC
CAGGAGCACTTCCGTTCCGGTCAGTGTCACCATGGAGGGTCTGACGCTGG
CCCGGTCCGGATGGAACAGCAACATGTTGGGCATGTTCGGCATGATAATG
GGCCTCTTTCTGATGATCATAGTGGCGTTAAGCTGCTACATAGTCCGATC
GAAGAAGCAAGGCAAGAGTGCATCCAGCGGATTGGGACTCGGTCGGAATC
GGGTGCACAGCCAGGCGCACAGCAGCGTGTCGTCTGCCAATCTCGTTACC
CACGAAAAGCTAGCGGGGAATGGCAACGGCAACGGAGCCAGCGTAACGAG
CGGCGGAGTCTCCGTGCTGCACATGAAGCACGGCGGTAACATTACCATGG
CCAATCCGATGAACAATGGCTTGCATCACGTGGCCAGTGGAGCCAGTAGT
AGCATGGCCCTCGGTAGTTCCGCCGCCTTGCTGGAGCGGGAACGAGAGAG
GGAGCGGGACCGGGAGCGCCAGCGGGAGAGCTATGCGGCTACAGTGCGCA
GCATAGTTTCGCGCGCCTCCGCCAATGGCCAGCTCTTCGAGGAGGATGAG
ATCGAGCACGACTCACTGCAGACGGAGAACAACAATCGGAAAGTGGCAGC
CACGGGAGTGGCAAGCGGTGGGGTTACCACCATCAGTACCACACCCGCCA
ACGCGGGCTCCAATCTTCTATCCGCCACCGATGCCATGGGTTCCTCTGAG
AACAACTTGACGGTCTACTTCTAGAAGCTTTCTAGACCAT
BS27807.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Cb-RC | 2358 | CG13664-PC | 1..2358 | 17..2374 | 11790 | 100 | Plus |
| Cad96Cb-RB | 2361 | CG13664-PB | 1..2361 | 17..2374 | 11725 | 99.9 | Plus |
| Cad96Cb-RD | 2370 | CG13664-PD | 1..2370 | 17..2374 | 11635 | 99.5 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Cb-RC | 2991 | CG13664-RC | 407..2765 | 17..2375 | 11795 | 100 | Plus |
| Cad96Cb-RB | 3016 | CG13664-RB | 429..2790 | 17..2375 | 11730 | 99.9 | Plus |
| Cad96Cb-RD | 3003 | CG13664-RD | 407..2777 | 17..2375 | 11640 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25225580..25226624 | 1423..379 | 5225 | 100 | Minus |
| 3R | 32079331 | 3R | 25224787..25225514 | 2151..1424 | 3640 | 100 | Minus |
| 3R | 32079331 | 3R | 25227845..25228148 | 379..76 | 1520 | 100 | Minus |
| 3R | 32079331 | 3R | 25224382..25224606 | 2375..2151 | 1125 | 100 | Minus |
| 3R | 32079331 | 3R | 25230633..25230693 | 77..17 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 07:54:19 has no hits.
BS27807.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:03:38 Download gff for
BS27807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..2764 | 17..2374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:52 Download gff for
BS27807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..2764 | 17..2374 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:32 Download gff for
BS27807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cad96Cb-RC | 407..2764 | 17..2374 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:32 Download gff for
BS27807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25224383..25224606 | 2151..2374 | 100 | <- | Minus |
| 3R | 25224788..25225514 | 1424..2150 | 100 | <- | Minus |
| 3R | 25225580..25226623 | 380..1423 | 100 | <- | Minus |
| 3R | 25227845..25228146 | 78..379 | 100 | <- | Minus |
| 3R | 25230633..25230693 | 17..77 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:52 Download gff for
BS27807.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21056355..21056415 | 17..77 | 100 | | Minus |
| arm_3R | 21050105..21050328 | 2151..2374 | 100 | <- | Minus |
| arm_3R | 21050510..21051236 | 1424..2150 | 100 | <- | Minus |
| arm_3R | 21051302..21052345 | 380..1423 | 100 | <- | Minus |
| arm_3R | 21053567..21053868 | 78..379 | 100 | <- | Minus |
BS27807.pep Sequence
Translation from 16 to 2373
> BS27807.pep
MRINHQWIYYAILSLCWFNKATLGAILDSRCYLEGGGSAESFLATEDLAV
GSIIGKLRINGDANAETGDINLSLREKNAPVEIHPGTKELALSVELDKEG
VRGPSSIYVNVICIRRHSTDPSFVIPVNVRVTDVNDNAPQWIGTPYTLTL
SEVTVPGTRILQGARAEDADQPGPFSTVEYQVLPGPYSEYVQFLNPLEGT
LVLKKALDYEQLQNFTVKLRAQDQGTPPRHSDTLLRVVITDADDQNPKFQ
RESYSAEIPADGRPGELRMRPEPLKAVDQDEGICAPIQYTIVQSQDAKYF
RIHPHNGAISLLTPIGYADVANGATLVVKATQIDNPDRYALTTVQLTRPG
SHSDLSTLAFVQKRFVMRIREDTAVGNRILALPTNKPGKHLKYVIPDPVN
SQFFSVGSLGELVLAKPLDYEKMTKHEFQVLATDGMTNSTAELTLEVIDV
NDWEPRFRETHYEFMVPKSSLQSRADSFEGVLIGKVEAADGDRNDKLELS
LRGQHAGLFEIDSTGNIYMRPEQLQSLNESTVHLIAIATDTGVPPRSTSV
PVSVTMEGLTLARSGWNSNMLGMFGMIMGLFLMIIVALSCYIVRSKKQGK
SASSGLGLGRNRVHSQAHSSVSSANLVTHEKLAGNGNGNGASVTSGGVSV
LHMKHGGNITMANPMNNGLHHVASGASSSMALGSSAALLERERERERDRE
RQRESYAATVRSIVSRASANGQLFEEDEIEHDSLQTENNNRKVAATGVAS
GGVTTISTTPANAGSNLLSATDAMGSSENNLTVYF*
BS27807.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cad96Cb-PC | 785 | CG13664-PC | 1..785 | 1..785 | 4013 | 100 | Plus |
| Cad96Cb-PB | 786 | CG13664-PB | 1..786 | 1..785 | 4001 | 99.9 | Plus |
| Cad96Cb-PD | 789 | CG13664-PD | 1..789 | 1..785 | 3994 | 99.4 | Plus |
| ds-PB | 3556 | CG17941-PB | 325..803 | 70..542 | 352 | 27.1 | Plus |
| ds-PA | 3556 | CG17941-PA | 325..803 | 70..542 | 352 | 27.1 | Plus |
| ds-PB | 3556 | CG17941-PB | 833..1370 | 41..571 | 276 | 24.6 | Plus |
| ds-PB | 3556 | CG17941-PB | 1156..1711 | 38..558 | 271 | 25.7 | Plus |
| ds-PB | 3556 | CG17941-PB | 88..601 | 46..556 | 268 | 24.5 | Plus |
| ds-PB | 3556 | CG17941-PB | 1372..1929 | 42..544 | 265 | 25.9 | Plus |
| ds-PB | 3556 | CG17941-PB | 1020..1473 | 125..554 | 239 | 24.7 | Plus |
| ds-PB | 3556 | CG17941-PB | 1938..2416 | 127..554 | 205 | 22.7 | Plus |
| ds-PB | 3556 | CG17941-PB | 272..706 | 127..555 | 203 | 23 | Plus |
| ds-PB | 3556 | CG17941-PB | 1609..2146 | 36..548 | 197 | 20.8 | Plus |
| ds-PB | 3556 | CG17941-PB | 2590..3283 | 83..777 | 185 | 21.4 | Plus |
| ds-PB | 3556 | CG17941-PB | 2414..2759 | 127..463 | 183 | 26.4 | Plus |
| ds-PB | 3556 | CG17941-PB | 2088..2651 | 63..569 | 167 | 21.9 | Plus |
