BS27808.complete Sequence
2558 bp assembled on 2011-12-14
GenBank Submission: KX804693
> BS27808.complete
GAAGTTATCAGTCGACATGACAAGTGATGGTGCTGTTACGTTTTGGATAT
TTTTGCTTTGTTTAATCGCCTCGCCGCACCTGCAAGGGGGCGTGGCCGGG
AGGCCCGATGAACTGCACATCGGCGGCATCTTTCCGATAGCCGGCAAAGG
AGGATGGCAGGGCGGCCAGGCGTGTATGCCTGCCGCAAGACTGGCGTTGG
ATGATGTCAACAAGCAGCCAAATCTGCTGCCGGGCTTCAAGCTCATCCTG
CACAGCAACGACAGTGAGTGTGAGCCCGGTTTGGGCGCCAGCGTGATGTA
CAATCTGCTCTATAATAAACCGCAAAAGCTGATGCTGTTGGCAGGATGCA
GCACGGTCTGCACCACTGTAGCCGAGGCTGCCAAAATGTGGAATCTAATT
GTGCTCTGCTACGGGGCCTCGAGTCCGGCTCTTTCGGATCGCAAACGATT
CCCCACTCTATTCCGCACCCATCCATCGGCCACGGTGCACAATCCAACGC
GCATCAAGCTGATGAAGAAATTCGGCTGGTCCCGGGTGGCCATTCTGCAG
CAGGCGGAGGAGGTCTTTATATCGACCGTAGAGGATCTCGAGAATCGATG
CATGGAGGCTGGCGTTGAAATCGTAACTAGACAATCATTTCTATCCGATC
CAACAGACGCCGTGCGCAATTTGCGACGCCAGGATGCACGCATCATTGTG
GGACTCTTCTATGTGGTGGCCGCCAGGAGGGTGCTCTGCGAAATGTACAA
ACAGCAGCTATATGGCCGAGCTCATGTGTGGTTCTTTATTGGCTGGTACG
AGGACAACTGGTACGAGGTGAATCTGAAAGCAGAGGGCATCACCTGCACT
GTTGAACAGATGCGAATAGCTGCCGAAGGACATCTGACAACGGAAGCGCT
CATGTGGAATCAGAACAATCAGACAACTATATCCGGAATGACTGCAGAGG
AATTTCGACATCGACTGAATCAGGCGCTAATCGAGGAGGGTTACGACATT
AACCACGATCGCTATCCGGAGGGATATCAGGAGGCGCCACTCGCCTACGA
TGCAGTGTGGAGTGTGGCTTTGGCTTTCAACAAGACCATGGAACGATTGA
CAACCGGGAAGAAATCTCTGAGGGATTTTACCTATACGGACAAGGAGATT
GCCGATGAAATCTACGCTGCCATGAACTCCACACAATTTCTGGGTGTATC
GGGTGTGGTGGCATTCAGTTCTCAGGGCGATCGTATTGCTCTTACACAGA
TCGAACAGATGATAGACGGCAAGTACGAGAAGTTGGGTTACTACGATACT
CAGTTGGATAACCTATCCTGGTTGAATACTGAACAGTGGATTGGTGGCAA
GGTTCCTCAAGATCGCACAATTGTCACCCATGTTCTACGCACCGTGTCCT
TGCCATTATTTGTGTGCATGTGCACAATATCCAGTTGTGGCATATTCGTT
GCCTTCGCCTTGATCATCTTTAATATATGGAATAAGCATAGAAGAGTAAT
ACAATCCTCGCATCCCGTTTGCAATACGATCATGTTATTTGGTGTCATCA
TCTGTCTAATATCTGTCATCTTACTGGGCATCGACGGACGCTTTGTCAGC
CCCGAGGAATATCCAAAGATATGTCAAGCGCGGGCTTGGTTACTATCCAC
CGGTTTTACACTAGCATACGGTGCTATGTTCAGCAAGGTCTGGCGTGTGC
ATCGTTTTACAACAAAAGCAAAAACTGACCCAAAGAAAAAAGTGGAACCT
TGGAAGCTATACACCATGGTTTCGGGGCTATTATCAATAGATTTAGTGAT
ATTACTCTCATGGCAGATCTTTGATCCGCTGCAGCGTTATCTCGAAACAT
TCCCACTCGAAGATCCAGTATCTACTACTGATGATATTAAAATACGTCCA
GAGCTTGAGCATTGTGAAAGTCAACGCAACTCCATGTGGTTGGGTCTTGT
ATACGGCTTCAAGGGGCTAATCCTGGTGTTTGGCCTCTTTTTGGCGTACG
AGACGCGCTCCATTAAAGTGAAACAGATCAACGATTCGCGTTATGTGGGC
ATGAGCATCTATAACGTGGTCGTCCTTTGCCTGATAACAGCTCCGGTGGG
CATGGTCATTGCATCGCAACAGGACGCGTCCTTTGCCTTCGTTGCTCTAG
CTGTGATATTCTGTTGTTTCCTAAGCATGCTGCTGATATTTGTGCCAAAG
GTCATTGAGGTTATACGTCATCCCAAGGATAAGGCCGAATCGAAATACAA
TCCCGATTCAGCCATATCGAAAGAGGACGAAGAACGCTATCAGAAACTTG
TTACCGAAAACGAGGAATTGCAACGATTAATAACACAGAAGGAGGAAAAG
ATTCGAGTCCTGCGACAGCGTCTGGTGGAGCGGGGCGACGCCAAGGGCAC
AGAACTGAATGGTGCAACAGGTGTCGCCTCCGCCGCCGTTGCAACAACTT
CGCAGCCCGCTTCCCTCATCAACTCATCAGCACATGCCACGCCCGCAGCC
ACACTCGCAATCACACAAGATACTCATGAGCATCGTACATGAAAGCTTTC
TAGACCAT
BS27808.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:54:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R1-RC | 2526 | CG15274-PC | 1..2526 | 17..2542 | 12630 | 100 | Plus |
| GABA-B-R1-RB | 2526 | CG15274-PB | 1..2526 | 17..2542 | 12630 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:54:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R1-RC | 5642 | CG15274-RC | 1070..3597 | 17..2544 | 12640 | 100 | Plus |
| GABA-B-R1-RB | 4922 | CG15274-RB | 1070..3597 | 17..2544 | 12640 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:54:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 15030429..15030690 | 1943..2204 | 1310 | 100 | Plus |
| 2L | 23513712 | 2L | 15021095..15021346 | 17..268 | 1260 | 100 | Plus |
| 2L | 23513712 | 2L | 15026384..15026629 | 957..1202 | 1230 | 100 | Plus |
| 2L | 23513712 | 2L | 15025846..15026064 | 574..792 | 1095 | 100 | Plus |
| 2L | 23513712 | 2L | 15030163..15030374 | 1734..1945 | 1060 | 100 | Plus |
| 2L | 23513712 | 2L | 15032000..15032183 | 2336..2519 | 920 | 100 | Plus |
| 2L | 23513712 | 2L | 15025614..15025785 | 403..574 | 860 | 100 | Plus |
| 2L | 23513712 | 2L | 15026155..15026321 | 791..957 | 835 | 100 | Plus |
| 2L | 23513712 | 2L | 15026687..15026839 | 1201..1353 | 765 | 100 | Plus |
| 2L | 23513712 | 2L | 15029587..15029731 | 1350..1494 | 725 | 100 | Plus |
| 2L | 23513712 | 2L | 15030745..15030884 | 2199..2338 | 700 | 100 | Plus |
| 2L | 23513712 | 2L | 15025388..15025524 | 267..403 | 685 | 100 | Plus |
| 2L | 23513712 | 2L | 15029788..15029913 | 1493..1618 | 630 | 100 | Plus |
| 2L | 23513712 | 2L | 15029983..15030101 | 1617..1735 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 07:54:48 has no hits.
BS27808.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-12-14 10:03:40 Download gff for
BS27808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R1-RC | 247..2771 | 17..2541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:29:55 Download gff for
BS27808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R1-RB | 1070..3594 | 17..2541 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:06:44 Download gff for
BS27808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GABA-B-R1-RB | 1070..3594 | 17..2541 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:06:44 Download gff for
BS27808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 15030747..15030884 | 2201..2338 | 100 | -> | Plus |
| 2L | 15029589..15029731 | 1352..1494 | 100 | -> | Plus |
| 2L | 15029790..15029913 | 1495..1618 | 100 | -> | Plus |
| 2L | 15029985..15030101 | 1619..1735 | 100 | -> | Plus |
| 2L | 15032003..15032183 | 2339..2519 | 100 | -> | Plus |
| 2L | 15032635..15032656 | 2520..2541 | 100 | | Plus |
| 2L | 15030430..15030686 | 1944..2200 | 100 | -> | Plus |
| 2L | 15021095..15021346 | 17..268 | 100 | -> | Plus |
| 2L | 15025390..15025524 | 269..403 | 100 | -> | Plus |
| 2L | 15025615..15025785 | 404..574 | 100 | -> | Plus |
| 2L | 15025847..15026063 | 575..791 | 100 | -> | Plus |
| 2L | 15026156..15026321 | 792..957 | 100 | -> | Plus |
| 2L | 15026385..15026628 | 958..1201 | 100 | -> | Plus |
| 2L | 15026688..15026837 | 1202..1351 | 100 | -> | Plus |
| 2L | 15030165..15030372 | 1736..1943 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:29:55 Download gff for
BS27808.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 15026688..15026837 | 1202..1351 | 100 | -> | Plus |
| arm_2L | 15029589..15029731 | 1352..1494 | 100 | -> | Plus |
| arm_2L | 15029790..15029913 | 1495..1618 | 100 | -> | Plus |
| arm_2L | 15029985..15030101 | 1619..1735 | 100 | -> | Plus |
| arm_2L | 15026385..15026628 | 958..1201 | 100 | -> | Plus |
| arm_2L | 15021095..15021346 | 17..268 | 100 | -> | Plus |
| arm_2L | 15025390..15025524 | 269..403 | 100 | -> | Plus |
| arm_2L | 15025615..15025785 | 404..574 | 100 | -> | Plus |
| arm_2L | 15025847..15026063 | 575..791 | 100 | -> | Plus |
| arm_2L | 15026156..15026321 | 792..957 | 100 | -> | Plus |
| arm_2L | 15030165..15030372 | 1736..1943 | 100 | -> | Plus |
| arm_2L | 15030430..15030686 | 1944..2200 | 100 | -> | Plus |
| arm_2L | 15030747..15030884 | 2201..2338 | 100 | -> | Plus |
| arm_2L | 15032003..15032183 | 2339..2519 | 100 | -> | Plus |
| arm_2L | 15032635..15032656 | 2520..2541 | 100 | | Plus |
BS27808.pep Sequence
Translation from 16 to 2541
> BS27808.pep
MTSDGAVTFWIFLLCLIASPHLQGGVAGRPDELHIGGIFPIAGKGGWQGG
QACMPAARLALDDVNKQPNLLPGFKLILHSNDSECEPGLGASVMYNLLYN
KPQKLMLLAGCSTVCTTVAEAAKMWNLIVLCYGASSPALSDRKRFPTLFR
THPSATVHNPTRIKLMKKFGWSRVAILQQAEEVFISTVEDLENRCMEAGV
EIVTRQSFLSDPTDAVRNLRRQDARIIVGLFYVVAARRVLCEMYKQQLYG
RAHVWFFIGWYEDNWYEVNLKAEGITCTVEQMRIAAEGHLTTEALMWNQN
NQTTISGMTAEEFRHRLNQALIEEGYDINHDRYPEGYQEAPLAYDAVWSV
ALAFNKTMERLTTGKKSLRDFTYTDKEIADEIYAAMNSTQFLGVSGVVAF
SSQGDRIALTQIEQMIDGKYEKLGYYDTQLDNLSWLNTEQWIGGKVPQDR
TIVTHVLRTVSLPLFVCMCTISSCGIFVAFALIIFNIWNKHRRVIQSSHP
VCNTIMLFGVIICLISVILLGIDGRFVSPEEYPKICQARAWLLSTGFTLA
YGAMFSKVWRVHRFTTKAKTDPKKKVEPWKLYTMVSGLLSIDLVILLSWQ
IFDPLQRYLETFPLEDPVSTTDDIKIRPELEHCESQRNSMWLGLVYGFKG
LILVFGLFLAYETRSIKVKQINDSRYVGMSIYNVVVLCLITAPVGMVIAS
QQDASFAFVALAVIFCCFLSMLLIFVPKVIEVIRHPKDKAESKYNPDSAI
SKEDEERYQKLVTENEELQRLITQKEEKIRVLRQRLVERGDAKGTELNGA
TGVASAAVATTSQPASLINSSAHATPAATLAITQDTHEHRT*
BS27808.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:38:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GABA-B-R1-PC | 841 | CG15274-P1-RC | 1..841 | 1..841 | 4383 | 100 | Plus |
| GABA-B-R1-PB | 841 | CG15274-P1-RB | 1..841 | 1..841 | 4383 | 100 | Plus |
| GABA-B-R2-PA | 1220 | CG6706-PA | 23..802 | 25..814 | 1130 | 32.6 | Plus |
| GABA-B-R2-PB | 1221 | CG6706-PB | 23..802 | 25..814 | 1130 | 32.6 | Plus |
| GABA-B-R2-PC | 1224 | CG6706-PC | 23..806 | 25..814 | 1118 | 32.5 | Plus |
