Clone BS27817 Report

Search the DGRC for BS27817

Clone and Library Details

Library:BS
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with native stop reading frames
Original Plate Number:278
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptCG12541-RC
Protein status:BS27817.pep: full length peptide match
Sequenced Size:407

Clone Sequence Records

BS27817.complete Sequence

407 bp assembled on 2011-09-22

GenBank Submission: KX802740

> BS27817.complete
GAAGTTATCAGTCGACATGCTTTTCTTCAATCGATGGGGCAAGATCCGGA
TGCTGGAGCCGTATCAGCCCAAGTTCCAGCAGCAGCATCGCAGTTCCTGT
CCGCTGGTCGATTTGGATGCTGTTACCACGCACCAGCGCTCCTCCGTGTC
GCGCATGTCGATGGGCATGGTGCACAATCTCAATATGCCGACGTGTCAAT
TTGCGGCCTATAATCCCAACATTTATGCCAAGGGTTACGCCTCGCATGTT
TCGGCGTCGCGTCCCCGCCAGAATTCGGTGTTTGTTGGGGCCAGTACCAG
TCACTATTTGATGCCAAGACCACCGAGGAAGACCCGATCGGCGATGGACC
TGCACTCGATGGTGCTGGACGAGAGTGCCGAACAGGTGTAGAAGCTTTCT
AGACCAT

BS27817.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG12541-RE 792 CG12541-PE 418..792 17..391 1875 100 Plus
CG12541-RD 792 CG12541-PD 418..792 17..391 1875 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG12541-RE 2529 CG12541-RE 826..1200 17..391 1875 100 Plus
CG12541-RD 1752 CG12541-RD 826..1200 17..391 1875 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:13
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 7022937..7023095 391..233 795 100 Minus
X 23542271 X 7032093..7032212 136..17 600 100 Minus
X 23542271 X 7031833..7031934 235..134 510 100 Minus
Blast to na_te.dros performed 2014-11-27 08:51:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dmer\R1A3 3772 Dmer\R1A3 MERCR1A3 3772bp 641..693 89..37 103 66 Minus

BS27817.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:16 Download gff for BS27817.complete
Subject Subject Range Query Range Percent Splice Strand
CG12541-RC 1079..1453 17..391 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:29 Download gff for BS27817.complete
Subject Subject Range Query Range Percent Splice Strand
CG12541-RD 826..1200 17..391 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:36 Download gff for BS27817.complete
Subject Subject Range Query Range Percent Splice Strand
CG12541-RD 826..1200 17..391 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:36 Download gff for BS27817.complete
Subject Subject Range Query Range Percent Splice Strand
X 7022937..7023094 234..391 100 <- Minus
X 7031835..7031931 137..233 100 <- Minus
X 7032093..7032212 17..136 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:29 Download gff for BS27817.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 6916970..6917127 234..391 100 <- Minus
arm_X 6925868..6925964 137..233 100 <- Minus
arm_X 6926126..6926245 17..136 100   Minus

BS27817.pep Sequence

Translation from 16 to 390

> BS27817.pep
MLFFNRWGKIRMLEPYQPKFQQQHRSSCPLVDLDAVTTHQRSSVSRMSMG
MVHNLNMPTCQFAAYNPNIYAKGYASHVSASRPRQNSVFVGASTSHYLMP
RPPRKTRSAMDLHSMVLDESAEQV*

BS27817.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG12541-PE 263 CG12541-PE 140..263 1..124 656 100 Plus
CG12541-PD 263 CG12541-PD 140..263 1..124 656 100 Plus