BS27817.complete Sequence
407 bp assembled on 2011-09-22
GenBank Submission: KX802740
> BS27817.complete
GAAGTTATCAGTCGACATGCTTTTCTTCAATCGATGGGGCAAGATCCGGA
TGCTGGAGCCGTATCAGCCCAAGTTCCAGCAGCAGCATCGCAGTTCCTGT
CCGCTGGTCGATTTGGATGCTGTTACCACGCACCAGCGCTCCTCCGTGTC
GCGCATGTCGATGGGCATGGTGCACAATCTCAATATGCCGACGTGTCAAT
TTGCGGCCTATAATCCCAACATTTATGCCAAGGGTTACGCCTCGCATGTT
TCGGCGTCGCGTCCCCGCCAGAATTCGGTGTTTGTTGGGGCCAGTACCAG
TCACTATTTGATGCCAAGACCACCGAGGAAGACCCGATCGGCGATGGACC
TGCACTCGATGGTGCTGGACGAGAGTGCCGAACAGGTGTAGAAGCTTTCT
AGACCAT
BS27817.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:51:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12541-RE | 792 | CG12541-PE | 418..792 | 17..391 | 1875 | 100 | Plus |
CG12541-RD | 792 | CG12541-PD | 418..792 | 17..391 | 1875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:51:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12541-RE | 2529 | CG12541-RE | 826..1200 | 17..391 | 1875 | 100 | Plus |
CG12541-RD | 1752 | CG12541-RD | 826..1200 | 17..391 | 1875 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:51:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 7022937..7023095 | 391..233 | 795 | 100 | Minus |
X | 23542271 | X | 7032093..7032212 | 136..17 | 600 | 100 | Minus |
X | 23542271 | X | 7031833..7031934 | 235..134 | 510 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 08:51:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..693 | 89..37 | 103 | 66 | Minus |
BS27817.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-09-22 16:41:16 Download gff for
BS27817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12541-RC | 1079..1453 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:02:29 Download gff for
BS27817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12541-RD | 826..1200 | 17..391 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:27:36 Download gff for
BS27817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12541-RD | 826..1200 | 17..391 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:27:36 Download gff for
BS27817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 7022937..7023094 | 234..391 | 100 | <- | Minus |
X | 7031835..7031931 | 137..233 | 100 | <- | Minus |
X | 7032093..7032212 | 17..136 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:02:29 Download gff for
BS27817.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6916970..6917127 | 234..391 | 100 | <- | Minus |
arm_X | 6925868..6925964 | 137..233 | 100 | <- | Minus |
arm_X | 6926126..6926245 | 17..136 | 100 | | Minus |
BS27817.pep Sequence
Translation from 16 to 390
> BS27817.pep
MLFFNRWGKIRMLEPYQPKFQQQHRSSCPLVDLDAVTTHQRSSVSRMSMG
MVHNLNMPTCQFAAYNPNIYAKGYASHVSASRPRQNSVFVGASTSHYLMP
RPPRKTRSAMDLHSMVLDESAEQV*
BS27817.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:19:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12541-PE | 263 | CG12541-PE | 140..263 | 1..124 | 656 | 100 | Plus |
CG12541-PD | 263 | CG12541-PD | 140..263 | 1..124 | 656 | 100 | Plus |